Factsheet for PGSC0003DMT400054911

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007220.1.1	Tomato	cytosol	67.37	69.5
PGSC0003DMT400054803	Potato	cytosol	38.0	67.35
PGSC0003DMT400054796	Potato	cytosol, plastid	78.31	66.34
PGSC0003DMT400054902	Potato	cytosol	35.89	62.54
PGSC0003DMT400054909	Potato	cytosol	47.79	60.44
PGSC0003DMT400091014	Potato	nucleus	62.0	53.21
PGSC0003DMT400054904	Potato	cytosol	58.35	50.33
CDY34224	Canola	cytosol	5.57	42.03
PGSC0003DMT400032362	Potato	cytosol	55.66	41.43
Os05t0210600-01	Rice	cytosol	30.52	39.65
Bra023795.1-P	Field mustard	cytosol	6.53	38.64
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	37.04	38.37
Zm00001d004494_P001	Maize	cytosol, mitochondrion	16.12	37.84
VIT_19s0014g01470.t01	Wine grape	cytosol	49.52	37.23
KRH26223	Soybean	nucleus	47.6	36.69
KRH55099	Soybean	nucleus	47.6	36.58
KRH21985	Soybean	cytosol	48.18	36.27
KRH27330	Soybean	cytosol	48.18	35.96
GSMUA_Achr7P24480_001	Banana	cytosol	44.72	35.9
GSMUA_Achr10P...	Banana	cytosol	45.49	35.53
GSMUA_Achr4P08560_001	Banana	cytosol	46.26	35.18
Bra038116.1-P	Field mustard	cytosol	43.95	34.8
CDY25865	Canola	cytosol	43.76	34.65
CDY40820	Canola	mitochondrion	18.62	34.52
CDY25722	Canola	cytosol, plastid	44.15	34.48
CDY45930	Canola	cytosol	43.57	34.45
CDY02514	Canola	cytosol, plastid	43.95	34.18
Bra030946.1-P	Field mustard	cytosol, plastid	43.95	34.18
AT1G53300.1	Thale cress	cytosol	43.95	32.76
EES01073	Sorghum	cytosol	42.8	32.75
Zm00001d044479_P001	Maize	cytosol	42.61	32.6
CDY34222	Canola	cytosol	19.19	32.47
GSMUA_Achr3P25160_001	Banana	cytosol	43.95	32.16
Os01t0218200-00	Rice	plastid	41.46	32.14
TraesCS3A01G143000.1	Wheat	cytosol	41.27	31.99
TraesCS3B01G162100.1	Wheat	cytosol	41.27	31.99
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	42.03	31.83
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	42.03	31.83
Zm00001d039362_P002	Maize	cytosol	40.88	31.79
Zm00001d011352_P001	Maize	cytosol	41.46	31.72
Zm00001d008930_P003	Maize	cytosol	41.07	31.7
TraesCS3D01G144600.1	Wheat	cytosol	41.07	31.7
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	41.84	31.69
TraesCS3A01G221800.1	Wheat	cytosol	41.84	31.69
HORVU1Hr1G093390.2	Barley	cytosol	40.69	31.5
EES02247	Sorghum	plastid	41.27	31.43
TraesCS1B01G462300.1	Wheat	cytosol	41.65	31.27
TraesCS1D01G437100.1	Wheat	nucleus	41.84	31.23
HORVU3Hr1G027650.2	Barley	mitochondrion	39.92	31.23
TraesCS1A01G427400.1	Wheat	cytosol	41.27	30.85
OQU78515	Sorghum	cytosol	40.88	30.43
AT3G14950.1	Thale cress	cytosol	41.65	29.73
CDY32327	Canola	cytosol	40.88	29.22
PGSC0003DMT400022057	Potato	plastid	24.38	29.06
CDY20095	Canola	nucleus	40.31	28.85
Bra027292.1-P	Field mustard	cytosol	39.54	28.07
Bra021583.1-P	Field mustard	nucleus	40.69	28.04
CDX98517	Canola	cytosol	38.96	28.04
Os05t0587300-01	Rice	cytosol	29.75	27.93
CDY34223	Canola	cytosol	17.47	27.91
Bra023793.1-P	Field mustard	cytosol	22.07	27.91
CDX97619	Canola	cytosol	38.77	27.86
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	16.89	26.99
PGSC0003DMT400045666	Potato	cytosol	26.87	25.69
PGSC0003DMT400053133	Potato	cytosol, plastid	26.1	22.7
GSMUA_AchrUn_...	Banana	cytosol	11.32	22.01
Zm00001d009724_P009	Maize	cytosol	40.12	19.55
PGSC0003DMT400029173	Potato	cytosol	9.4	16.72
Zm00001d006366_P001	Maize	cytosol	0.19	0.43
Zm00001d033961_P001	Maize	cytosol	0.19	0.43

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	UniProt:M1BX13	PFAM:PF00085
PFAM:PF00515	PFAM:PF07719	PFAM:PF13432	EnsemblPlantsGene:PGSC0003DMG400021306	PGSC:PGSC0003DMG400021306	EnsemblPlants:PGSC0003DMT400054911
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_2	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002949F6E	SEG:seg	:	:

Description

Small glutamine-rich tetratricopeptide repeat-containing protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400021306]

Coordinates

chr10:+:2230600..2232870

Molecular Weight (calculated)

57965.6 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.387

Length

521 amino acids

Sequence
(BLAST)

001: MSGSKKKSVG SSSLADEMKN SLKFEERSNS GESASVSGHN VSSYAAAALP VEFTPAVWNE KGNEYYEKDD YKEALNFYEK AIASCPGDGG LHYNRAGALI
101: RLKRFTEAIR EFEEAIRLAP TLVQPRQCLG LLLLGLGQAE NAREHLFSMG QKPDQATLQK LQAVAEHIDK CTEARRLEDW TTMLKEAKAA TTSGADSSPQ
201: LFACQAEAHL KLHQLTEAET LIYIARMHEP SSARQSKIFG MLSEAYIFFV QAQIDSILGK FDAARTAIEI AARIDHQSAE VTGKRKNTRL VGKARTLGNE
301: HFNSERYAQA CNAYGEGLLL DSSNSVLYYS RANCCFKLGE WEKSLADSNR ALLFRPEYTK ALYLKAASNI KLERWADAVR DYEILRQELP NNKEVAENLS
401: HARVELKKSH REGDGKVELV SDVEKFQAVI ASGESVVYFN ELSNPECKWM SSVMDTLSVK YRSVIFLKVD VEQSPAIAAA ENITVVPRFN LYKDGSRVVN
501: KGTATSNELE LLIKDSLIDP I

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.