CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26223	Soybean	nucleus	93.66	93.93
KRH21985	Soybean	cytosol	75.52	73.99
KRH27330	Soybean	cytosol	75.22	73.07
VIT_19s0014g01470.t01	Wine grape	cytosol	68.88	67.39
PGSC0003DMT400032362	Potato	cytosol	64.01	62.0
Solyc07g062580.2.1	Tomato	cytosol	64.01	61.91
Bra038116.1-P	Field mustard	cytosol	60.03	61.85
CDY25865	Canola	cytosol	59.88	61.7
CDY45930	Canola	cytosol	59.88	61.61
Bra030946.1-P	Field mustard	cytosol, plastid	60.47	61.19
CDY02514	Canola	cytosol, plastid	60.47	61.19
CDY25722	Canola	cytosol, plastid	60.03	61.02
AT1G53300.1	Thale cress	cytosol	61.95	60.09
GSMUA_Achr10P...	Banana	cytosol	57.82	58.77
PGSC0003DMT400054803	Potato	cytosol	24.78	57.14
KRH22291	Soybean	plastid	48.67	56.51
GSMUA_Achr7P24480_001	Banana	cytosol	53.83	56.24
GSMUA_Achr4P08560_001	Banana	cytosol	56.64	56.06
TraesCS3B01G162100.1	Wheat	cytosol	55.31	55.8
Os01t0218200-00	Rice	plastid	55.01	55.51
TraesCS3D01G144600.1	Wheat	cytosol	55.01	55.26
TraesCS3A01G143000.1	Wheat	cytosol	54.72	55.21
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	40.86	55.07
Zm00001d039362_P002	Maize	cytosol	54.28	54.93
Zm00001d008930_P003	Maize	cytosol	54.13	54.37
EES02247	Sorghum	plastid	54.72	54.24
Os05t0210600-01	Rice	cytosol	31.71	53.62
EES01073	Sorghum	cytosol	53.83	53.6
Zm00001d044479_P001	Maize	cytosol	53.39	53.16
HORVU1Hr1G093390.2	Barley	cytosol	52.21	52.6
HORVU3Hr1G027650.2	Barley	mitochondrion	51.62	52.55
TraesCS1B01G462300.1	Wheat	cytosol	52.95	51.73
GSMUA_Achr3P25160_001	Banana	cytosol	54.13	51.54
Zm00001d011352_P001	Maize	cytosol	51.77	51.54
TraesCS1A01G427400.1	Wheat	cytosol	52.95	51.51
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	52.21	51.45
TraesCS1D01G437100.1	Wheat	nucleus	52.95	51.43
PGSC0003DMT400054902	Potato	cytosol	22.57	51.17
TraesCS3A01G221800.1	Wheat	cytosol	51.92	51.16
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	51.92	51.16
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	51.62	50.87
OQU78515	Sorghum	cytosol	51.62	50.0
KRH27037	Soybean	nucleus	49.7	49.93
PGSC0003DMT400054904	Potato	cytosol	44.4	49.83
PGSC0003DMT400054796	Potato	cytosol, plastid	44.69	49.27
AT3G14950.1	Thale cress	cytosol	52.95	49.18
Solyc10g007240.1.1	Tomato	cytosol	42.33	48.32
CDY34224	Canola	cytosol	4.87	47.83
Solyc10g007230.1.1	Tomato	cytosol	42.04	47.82
Zm00001d004494_P001	Maize	cytosol, mitochondrion	15.63	47.75
PGSC0003DMT400054911	Potato	cytosol	36.58	47.6
PGSC0003DMT400054909	Potato	cytosol	28.61	47.09
Os05t0587300-01	Rice	cytosol	38.35	46.85
Solyc10g007220.1.1	Tomato	cytosol	33.92	45.54
Bra023795.1-P	Field mustard	cytosol	5.9	45.45
Bra027292.1-P	Field mustard	cytosol	49.12	45.37
Solyc10g007420.2.1	Tomato	cytosol	28.32	45.18
CDX97619	Canola	cytosol	48.08	44.97
CDX98517	Canola	cytosol	47.79	44.75
CDY20095	Canola	nucleus	47.79	44.51
GSMUA_AchrUn_...	Banana	cytosol	17.55	44.4
CDY32327	Canola	cytosol	47.64	44.31
Bra021583.1-P	Field mustard	nucleus	48.08	43.12
Solyc10g007250.1.1	Tomato	cytosol	17.7	43.01
PGSC0003DMT400091014	Potato	nucleus	37.32	41.68
CDY40820	Canola	mitochondrion	17.26	41.64
Solyc10g007430.1.1	Tomato	cytosol, plastid	23.01	41.27
CDY34222	Canola	cytosol	18.73	41.23
CDY34223	Canola	cytosol	18.73	38.96
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	18.73	38.96
Bra023793.1-P	Field mustard	cytosol	23.6	38.84
KRH59356	Soybean	plastid	24.19	38.23
KRH62368	Soybean	cytosol	35.84	37.16
KRH08675	Soybean	cytosol, mitochondrion, plastid	18.29	36.9
KRH15375	Soybean	cytosol	12.98	35.2
KRH53085	Soybean	cytosol	36.14	35.1
KRH43206	Soybean	cytosol, plastid	28.02	34.67
KRH16702	Soybean	nucleus	34.81	34.01
KRG97591	Soybean	plastid	27.29	33.76
KRH18895	Soybean	cytosol	34.96	33.71
KRH31282	Soybean	plastid	28.91	33.68
Zm00001d009724_P009	Maize	cytosol	49.56	31.43
KRH09945	Soybean	cytosol, endoplasmic reticulum	2.21	25.86
KRH23391	Soybean	cytosol	6.34	24.02
KRG99844	Soybean	cytosol	8.55	21.64
KRH46794	Soybean	cytosol	7.08	17.39
Zm00001d006366_P001	Maize	cytosol	0.44	1.29
Zm00001d033961_P001	Maize	cytosol	0.44	1.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100799577	MapMan:11.3.2.5	Gene3D:3.40.30.10	EMBL:ACUP02003884	EnsemblPlantsGene:GLYMA_06G230400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	UniProt:I1KDL9	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR013766	InterPro:IPR019734	EnsemblPlants:KRH55099	ProteinID:KRH55099	ProteinID:KRH55099.1	PFAM:PF00085
PFAM:PF00515	PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233A12D	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:35855650..35859776

Molecular Weight (calculated)

73565.8 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.450

Length

678 amino acids

Sequence
(BLAST)

001: MSHSGKKPVS SELGLTERFR DSLSCSDDNK PDFRELDLSS PVSTLRPRQH HSAPTTTSSS STSTSSGSTG SGSGRNGNNN AVSKRSHSGE LSGSSETNSP
101: TRVSKPGHRR SNSGQSQRSP SSSSSAVNSP PLNVLPAGNI CPSGRVLKAA TAAVAPSRSS RSDVLGSGTG NYGHGSIMRG GKGGGGGGGG GGDVRIAGES
201: AKGVDPEEVK RIGNEEYKRG HFVEALCLYD RAIAMSPGNA AYRSNRAAAL TGLGRLPEAV KACEEAVGLD PNYGRAHQRL AMLFLRLGQV EDARKHLCYP
301: GLQLDPAELQ KLQIVEKHIN KCGDVRRIRD WKGVLREVDA AVAAGADSCV QLFMCRAEAL LKLHQIDDAE SCISWIPKSK PHPGSLSQAR FFGMFSEAYC
401: FFVRAQIEMA FGRFENAVTT AEKASQIDPR NVEVAVLLNN VRMVARARLR GNDLFKSERF TEACSAYGEG LRLDPSNSVL YCNRAACWFK LGQWERSIED
501: CNQALHIQPD YTKAILRRAA SNSKLERWEE AVTDYELLRR ELPDDNEVAE NLFHAQVALK KSRGEEVHNL KFGGEVEDIS GLEQFRAAIS LPGVSVVHFE
601: TASNLQCKQI SPLVNTLCSR NPSINFLKVN IQTSPAVAAA ENVRVVPTFK IYKNGSQVKE IICPSHDMLE HSIRHYSL

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.