Factsheet for PGSC0003DMT400054796

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054909	Potato	cytosol	58.21	86.89
Solyc10g007230.1.1	Tomato	cytosol	83.25	85.91
PGSC0003DMT400054911	Potato	cytosol	66.34	78.31
PGSC0003DMT400054803	Potato	cytosol	36.42	76.19
Solyc10g007420.2.1	Tomato	cytosol	51.22	74.12
PGSC0003DMT400054904	Potato	cytosol	66.5	67.72
PGSC0003DMT400054902	Potato	cytosol	32.85	67.56
PGSC0003DMT400091014	Potato	nucleus	54.15	54.86
PGSC0003DMT400032362	Potato	cytosol	55.94	49.14
VIT_19s0014g01470.t01	Wine grape	cytosol	52.03	46.18
KRH21985	Soybean	cytosol	51.54	45.81
KRH27330	Soybean	cytosol	51.54	45.42
KRH55099	Soybean	nucleus	49.27	44.69
KRH26223	Soybean	nucleus	49.11	44.67
Bra038116.1-P	Field mustard	cytosol	47.15	44.07
CDY25865	Canola	cytosol	46.99	43.92
CDY45930	Canola	cytosol	46.5	43.4
Os05t0210600-01	Rice	cytosol	28.29	43.39
Bra030946.1-P	Field mustard	cytosol, plastid	46.67	42.84
CDY02514	Canola	cytosol, plastid	46.67	42.84
CDY25722	Canola	cytosol, plastid	46.34	42.73
CDY34224	Canola	cytosol	4.72	42.03
GSMUA_Achr10P...	Banana	cytosol	45.37	41.83
AT1G53300.1	Thale cress	cytosol	46.99	41.34
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	33.66	41.15
GSMUA_Achr4P08560_001	Banana	cytosol	45.37	40.73
GSMUA_Achr7P24480_001	Banana	cytosol	42.76	40.52
Os01t0218200-00	Rice	plastid	42.76	39.14
Zm00001d039362_P002	Maize	cytosol	42.28	38.81
Zm00001d004494_P001	Maize	cytosol, mitochondrion	13.98	38.74
Bra023795.1-P	Field mustard	cytosol	5.53	38.64
TraesCS3B01G162100.1	Wheat	cytosol	42.11	38.54
TraesCS3A01G143000.1	Wheat	cytosol	41.95	38.39
Zm00001d008930_P003	Maize	cytosol	41.79	38.07
GSMUA_Achr3P25160_001	Banana	cytosol	44.06	38.06
TraesCS3D01G144600.1	Wheat	cytosol	41.63	37.93
EES01073	Sorghum	cytosol	41.79	37.74
EES02247	Sorghum	plastid	41.95	37.72
Zm00001d044479_P001	Maize	cytosol	41.3	37.3
HORVU3Hr1G027650.2	Barley	mitochondrion	40.33	37.24
AT3G14950.1	Thale cress	cytosol	43.9	36.99
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	41.3	36.92
TraesCS1B01G462300.1	Wheat	cytosol	41.63	36.89
HORVU1Hr1G093390.2	Barley	cytosol	40.33	36.85
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	41.14	36.77
TraesCS3A01G221800.1	Wheat	cytosol	41.14	36.77
TraesCS1D01G437100.1	Wheat	nucleus	41.63	36.68
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	40.98	36.63
TraesCS1A01G427400.1	Wheat	cytosol	41.3	36.44
OQU78515	Sorghum	cytosol	40.81	35.86
Zm00001d011352_P001	Maize	cytosol	39.67	35.83
CDY40820	Canola	mitochondrion	16.26	35.59
CDY32327	Canola	cytosol	42.11	35.53
CDY20095	Canola	nucleus	41.95	35.44
Os05t0587300-01	Rice	cytosol	31.38	34.77
CDY34222	Canola	cytosol	17.24	34.42
Bra021583.1-P	Field mustard	nucleus	42.11	34.26
CDX98517	Canola	cytosol	40.33	34.25
Bra027292.1-P	Field mustard	cytosol	40.81	34.2
CDX97619	Canola	cytosol	40.16	34.07
PGSC0003DMT400022057	Potato	plastid	23.74	33.41
GSMUA_AchrUn_...	Banana	cytosol	13.66	31.34
CDY34223	Canola	cytosol	16.26	30.67
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	15.94	30.06
Bra023793.1-P	Field mustard	cytosol	20.0	29.85
PGSC0003DMT400045666	Potato	cytosol	26.18	29.54
PGSC0003DMT400053133	Potato	cytosol, plastid	26.5	27.21
Zm00001d009724_P009	Maize	cytosol	39.51	22.73
PGSC0003DMT400029173	Potato	cytosol	8.62	18.09
Zm00001d006366_P001	Maize	cytosol	0.0	0.0
Zm00001d033961_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102586873	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	UniProt:M1BWW2
PFAM:PF00085	PFAM:PF13432	EnsemblPlantsGene:PGSC0003DMG400021268	PGSC:PGSC0003DMG400021268	EnsemblPlants:PGSC0003DMT400054796	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002961260
RefSeq:XP_006360050.1	SEG:seg	:	:	:	:

Description

Small glutamine-rich tetratricopeptide repeat-containing protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400021268]

Coordinates

chr10:-:2315048..2317964

Molecular Weight (calculated)

67664.6 Da

IEP (calculated)

9.024

GRAVY (calculated)

-0.394

Length

615 amino acids

Sequence
(BLAST)

001: MSGSKKKSDS EKGSSSLADQ MKNSMRFEED DPRVLRLGSP VSTLRSRMSS SNTRSTSGSS ASVSGRNVSS STSSGSRKIK IVPAGNICPS GNVITGMRCK
101: PERTVLNDNE MIPGMYGYGS IMPGGAMPKT RRASPESSGV ASSSKNNPEE LNTQANEIYK KGNFAEALSL YDKAIAISPG DGRFHCNRAA ALMGLKRIIE
201: AVKECEEAIR LSPTYVRAHQ RLGSLLLCLG QVENAREHLF SLGQKPDQAT LQKLQAVAEH ISKCTDARRL EDWTTMLKEA EAATTSGADA SPQLFACQAE
301: AHLKLHQLKD AELWIYKARM YEPSATACQS KFFGMLSEAY VYFVQAQIDS TLGKFDDACT AIERAARIDL QSAEVTGKLK SMRLVGKART LGNEHFNSKK
401: YAQACTAYGE GLLLDSSNSV LYYNRANCWF KLGEWENSLA DSNHALLIRP HYTKALFRKA ASNIKLERWA DAVRDYEILR QELPNNEEVA ENLSHARVEL
501: KKSHREGDGK VELVSDLEKF RAAIASGASV VHFNELSNPE CMWISSVMDT LSAKYRSVIF LKVDVKQSPA IATAEKITVV PTFKLYKNGS RKVDTVTATP
601: GFLELLIKNT FIDPI

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.