CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78366	Canola	cytosol	95.96	95.96
CDY08814	Canola	cytosol, plastid	66.82	70.95
CDY40077	Canola	cytosol	82.74	64.17
CDX85779	Canola	cytosol	82.74	64.17
CDX69861	Canola	cytosol, mitochondrion	79.6	63.39
CDY21634	Canola	cytosol, mitochondrion	78.92	62.86
AT5G10090.1	Thale cress	cytosol	81.61	61.28
CDY68462	Canola	cytosol	69.96	52.97
KRH59356	Soybean	plastid	46.19	48.02
Os02t0753500-01	Rice	cytosol	31.39	47.95
KRH43206	Soybean	cytosol, plastid	57.17	46.53
KRH31282	Soybean	plastid	55.38	42.44
KRG97591	Soybean	plastid	51.79	42.15
HORVU4Hr1G024490.1	Barley	cytosol	29.37	40.94
Solyc04g055000.2.1	Tomato	cytosol	52.91	40.2
PGSC0003DMT400053133	Potato	cytosol, plastid	52.91	39.4
GSMUA_Achr11P...	Banana	plastid	50.22	38.29
VIT_00s0304g00060.t01	Wine grape	plastid	60.31	37.73
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	49.1	37.44
Zm00001d018088_P001	Maize	cytosol	49.33	37.29
KXG30730	Sorghum	cytosol, plastid	48.65	36.78
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	47.09	36.65
TraesCS6A01G301400.1	Wheat	mitochondrion	46.41	34.85
CDX87474	Canola	cytosol	39.01	33.08
HORVU6Hr1G074660.5	Barley	plastid	46.19	33.01
CDX88420	Canola	cytosol	38.34	32.51
GSMUA_Achr3P24690_001	Banana	cytosol	48.21	31.66
CDX79246	Canola	cytosol	35.65	31.05
CDX68030	Canola	cytosol	35.43	31.04
CDY49237	Canola	cytosol	39.46	26.39
CDY42827	Canola	cytosol	39.69	26.38
CDY61202	Canola	cytosol	39.24	26.08
CDY51514	Canola	cytosol	39.01	26.01
CDX71941	Canola	cytosol	39.01	25.82
CDY55390	Canola	cytosol	37.89	25.26
CDY34224	Canola	cytosol	3.81	24.64
CDY40820	Canola	mitochondrion	15.47	24.56
CDY25865	Canola	cytosol	36.1	24.47
CDY45930	Canola	cytosol	36.1	24.43
CDY34222	Canola	cytosol	16.59	24.03
CDY25722	Canola	cytosol, plastid	35.2	23.54
CDY02514	Canola	cytosol, plastid	34.75	23.13
CDX98517	Canola	cytosol	32.74	20.17
CDX97619	Canola	cytosol	32.06	19.72
CDY34223	Canola	cytosol	14.35	19.63
CDY32327	Canola	cytosol	31.61	19.34
CDY20095	Canola	nucleus	31.17	19.09
CDX72245	Canola	cytosol	9.64	16.35
CDY65185	Canola	cytosol	9.87	15.88
CDY39682	Canola	cytosol	9.87	15.88
CDX85780	Canola	nucleus	13.45	12.66
CDX68662	Canola	endoplasmic reticulum, mitochondrion	0.9	3.92
CDY28190	Canola	extracellular	0.9	3.92
CDY00576	Canola	cytosol	0.9	3.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX81156	ProteinID:CDX81156	ProteinID:CDX81156.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00134608001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EDB053	SEG:seg

Description

BnaC03g04100D

Coordinates

chrLK031823:-:1974436..1976148

Molecular Weight (calculated)

49403.5 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.515

Length

446 amino acids

Sequence
(BLAST)

001: MIIDNQKAKG INGSMVRASS GNVMLFGNLG NLKQPGTTAV GNKTNVQNNE ERPTSLVAPT SVSDNQEQPG SLCREVSTRM DPETLKTMAN EDYKNGNYVE
101: ALALYDAAIA IDPKKAAYRS NKSAALAALG RILEAVFECK EAIRMEPHYH KAQHRLAYLY LRLGEVENSI YHFKHSGPEA DQEDVLKAKT VQTLLSKCTE
201: AKRLRDWNTL IKETENTIAS GADAAPHVYA LQAEAFLKSL RHQEADDALS RCPVLDVEMS TKYYGPISSA GFLVVWAQVH MSSGRFGEAV EAIQRANKLD
301: GNNREVSMVL RRAQAVMAAR SKGNDYFKAG RFQEASAAYG AGLDHDSRNS VLLCNRAACL SKMSKFDRAV EDCTAALTVR PVYTKARLRR ADCNAKLGNW
401: ESAIKDYEIL RKETPEDEEV IRGLSETKEQ LVKCQGHREM DQEVTD

Best Arabidopsis Sequence Match ( AT2G42580.1 )
(BLAST)

001: MSHSRRLSLE PAIDSITGRF RDLQRNDDDV NKPDFRELDL GSPVSTLMPR GSASSSAAAT PTSSSGSSGS ASGKPSVSSQ MAKRLDDAYK SHSGELSSPG
101: SGMPTTTRIL KPGHRRSSST GTPLIFSGSS FTSATSHTSP QGGGSGATSA VSPNTGVLPA GNICPSGRIL KTGMASRTSS RTETLCTGTG NYGHGNVVRS
201: GGGGGTSGKA VRVAENGENP EELKRMGNDM YRRGSFSEAL SLYDRAILIS PGNAAYRSNR AAALTALRRL GEAVKECLEA VRIDPSYSRA HQRLASLYLR
301: LGEAENARRH ICFSGQCPDQ ADLQRLQTLE KHLRRCWEAR KIGDWKTAIK ETDAAIANGA DSSPQLVACK AEAFLRLKQI EDSDFCVSCI PRLDHHYHSQ
401: PQVKLFGMVV EAYVLCIQAQ VDMALGRFEN AVVKAERAAM LDQTNPEVVS VLNNVKMVVR ARTRGNELFS SGRFSEACVA YGDGLKQDDS NSVLYCNRAA
501: CWYKLGLWEK SVEDCNHALK SQPSYIKALL RRAASYGKLG RWEDAVKDYE FLRRELPGDS EVAESLERAK TVLMNRSQES KSLGFNNEVE AVSTLDKFKK
601: SVALPGVSVF HFKSSSNRQC EEISPFINTL CLRYPLVHFF MVDVEESMAL AKAESIRKVP TFKMYKNGDK VKEMVCPSHQ FLEDSIKHFL L

Arabidopsis Description

TTL3Inactive TPR repeat-containing thioredoxin TTL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.