Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY39682 | Canola | cytosol | 92.78 | 92.78 |
KRH09945 | Soybean | cytosol, endoplasmic reticulum | 16.97 | 81.03 |
CDX68662 | Canola | endoplasmic reticulum, mitochondrion | 26.71 | 72.55 |
CDY28190 | Canola | extracellular | 26.35 | 71.57 |
KRH23391 | Soybean | cytosol | 44.04 | 68.16 |
CDX72245 | Canola | cytosol | 60.65 | 63.88 |
TraesCS5B01G335700.1 | Wheat | cytosol | 51.99 | 62.88 |
TraesCS5D01G341400.1 | Wheat | cytosol | 51.62 | 62.45 |
TraesCS5A01G336700.1 | Wheat | cytosol | 51.62 | 62.45 |
GSMUA_Achr2P02050_001 | Banana | cytosol | 50.54 | 61.4 |
Os10t0486900-01 | Rice | cytosol | 50.18 | 58.9 |
Solyc07g006180.2.1 | Tomato | cytosol | 54.15 | 57.47 |
KRG99844 | Soybean | cytosol | 55.23 | 57.09 |
Zm00001d034423_P001 | Maize | cytosol | 49.82 | 55.65 |
KXG33951 | Sorghum | cytosol | 49.82 | 54.55 |
Zm00001d012121_P002 | Maize | cytosol | 49.46 | 53.73 |
VIT_11s0037g01020.t01 | Wine grape | cytosol | 47.29 | 53.69 |
PGSC0003DMT400029173 | Potato | cytosol | 53.79 | 50.85 |
KRH46794 | Soybean | cytosol | 50.54 | 50.72 |
CDY34224 | Canola | cytosol | 2.89 | 11.59 |
CDY08814 | Canola | cytosol, plastid | 15.52 | 10.24 |
CDX81156 | Canola | cytosol | 15.88 | 9.87 |
CDX78366 | Canola | cytosol | 15.88 | 9.87 |
CDX88420 | Canola | cytosol | 18.41 | 9.7 |
CDY25722 | Canola | cytosol, plastid | 23.1 | 9.6 |
CDX79246 | Canola | cytosol | 17.69 | 9.57 |
CDX87474 | Canola | cytosol | 18.05 | 9.51 |
CDX68030 | Canola | cytosol | 17.33 | 9.43 |
CDX71941 | Canola | cytosol | 22.74 | 9.35 |
CDY49237 | Canola | cytosol | 22.38 | 9.3 |
CDY55390 | Canola | cytosol | 22.38 | 9.27 |
CDY42827 | Canola | cytosol | 22.38 | 9.24 |
CDY25865 | Canola | cytosol | 21.66 | 9.12 |
CDY45930 | Canola | cytosol | 21.66 | 9.1 |
CDY02514 | Canola | cytosol, plastid | 22.02 | 9.1 |
CDY51514 | Canola | cytosol | 21.66 | 8.97 |
CDX69861 | Canola | cytosol, mitochondrion | 18.05 | 8.93 |
CDY21634 | Canola | cytosol, mitochondrion | 18.05 | 8.93 |
CDY61202 | Canola | cytosol | 21.3 | 8.79 |
CDX85779 | Canola | cytosol | 16.97 | 8.17 |
CDY40077 | Canola | cytosol | 16.97 | 8.17 |
CDY68462 | Canola | cytosol | 16.61 | 7.81 |
CDY20095 | Canola | nucleus | 20.22 | 7.69 |
CDY32327 | Canola | cytosol | 20.22 | 7.68 |
CDX98517 | Canola | cytosol | 18.77 | 7.18 |
CDY40820 | Canola | mitochondrion | 7.22 | 7.12 |
CDY34223 | Canola | cytosol | 8.3 | 7.06 |
CDX97619 | Canola | cytosol | 18.05 | 6.9 |
CDY34222 | Canola | cytosol | 7.58 | 6.82 |
CDY00576 | Canola | cytosol | 2.53 | 5.98 |
CDX85780 | Canola | nucleus | 9.39 | 5.49 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.2 | UniProt:A0A078JFE1 | EnsemblPlants:CDY65185 | ProteinID:CDY65185 | ProteinID:CDY65185.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00045343001 | InterPro:IPR011990 |
InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF00515 | PFAM:PF07719 | PFscan:PS50005 | PFscan:PS50293 |
PANTHER:PTHR22904 | PANTHER:PTHR22904:SF356 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
InterPro:TPR_1 | InterPro:TPR_2 | InterPro:TPR_repeat | UniParc:UPI0004EE9642 | SEG:seg | : |
Description
BnaC04g56230DBnaC04g56230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFE1]
Coordinates
chrLK034682:-:13562..15409
Molecular Weight (calculated)
30948.8 Da
IEP (calculated)
4.337
GRAVY (calculated)
-0.886
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIESESDD EISVTEVPIP SRSSSSTPKT TEAKIVGGDD SEGFETASER EVSDNEEEEE EGDRKEDAIE NQEPQPSDNP EKKEDQVEAV TDVGSNQKEK
101: ALEDANEAKM EGNKLFGNGL YEDALSKYEL ALQFAQEFPE SVDLRSICHS NRAICYLKLG KYAEAIKEST KAIELNPSYT KALVRRAEAH EKLEHFEDAL
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEALA KLKEMGNTIL GKFGMSVDNF KAVKDPNTGS YSFSFQN
101: ALEDANEAKM EGNKLFGNGL YEDALSKYEL ALQFAQEFPE SVDLRSICHS NRAICYLKLG KYAEAIKEST KAIELNPSYT KALVRRAEAH EKLEHFEDAL
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEALA KLKEMGNTIL GKFGMSVDNF KAVKDPNTGS YSFSFQN
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
Arabidopsis Description
TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.