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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39682 Canola cytosol 92.78 92.78
KRH09945 Soybean cytosol, endoplasmic reticulum 16.97 81.03
CDX68662 Canola endoplasmic reticulum, mitochondrion 26.71 72.55
CDY28190 Canola extracellular 26.35 71.57
KRH23391 Soybean cytosol 44.04 68.16
CDX72245 Canola cytosol 60.65 63.88
TraesCS5B01G335700.1 Wheat cytosol 51.99 62.88
TraesCS5D01G341400.1 Wheat cytosol 51.62 62.45
TraesCS5A01G336700.1 Wheat cytosol 51.62 62.45
GSMUA_Achr2P02050_001 Banana cytosol 50.54 61.4
Os10t0486900-01 Rice cytosol 50.18 58.9
Solyc07g006180.2.1 Tomato cytosol 54.15 57.47
KRG99844 Soybean cytosol 55.23 57.09
Zm00001d034423_P001 Maize cytosol 49.82 55.65
KXG33951 Sorghum cytosol 49.82 54.55
Zm00001d012121_P002 Maize cytosol 49.46 53.73
VIT_11s0037g01020.t01 Wine grape cytosol 47.29 53.69
PGSC0003DMT400029173 Potato cytosol 53.79 50.85
KRH46794 Soybean cytosol 50.54 50.72
CDY34224 Canola cytosol 2.89 11.59
CDY08814 Canola cytosol, plastid 15.52 10.24
CDX81156 Canola cytosol 15.88 9.87
CDX78366 Canola cytosol 15.88 9.87
CDX88420 Canola cytosol 18.41 9.7
CDY25722 Canola cytosol, plastid 23.1 9.6
CDX79246 Canola cytosol 17.69 9.57
CDX87474 Canola cytosol 18.05 9.51
CDX68030 Canola cytosol 17.33 9.43
CDX71941 Canola cytosol 22.74 9.35
CDY49237 Canola cytosol 22.38 9.3
CDY55390 Canola cytosol 22.38 9.27
CDY42827 Canola cytosol 22.38 9.24
CDY25865 Canola cytosol 21.66 9.12
CDY45930 Canola cytosol 21.66 9.1
CDY02514 Canola cytosol, plastid 22.02 9.1
CDY51514 Canola cytosol 21.66 8.97
CDX69861 Canola cytosol, mitochondrion 18.05 8.93
CDY21634 Canola cytosol, mitochondrion 18.05 8.93
CDY61202 Canola cytosol 21.3 8.79
CDX85779 Canola cytosol 16.97 8.17
CDY40077 Canola cytosol 16.97 8.17
CDY68462 Canola cytosol 16.61 7.81
CDY20095 Canola nucleus 20.22 7.69
CDY32327 Canola cytosol 20.22 7.68
CDX98517 Canola cytosol 18.77 7.18
CDY40820 Canola mitochondrion 7.22 7.12
CDY34223 Canola cytosol 8.3 7.06
CDX97619 Canola cytosol 18.05 6.9
CDY34222 Canola cytosol 7.58 6.82
CDY00576 Canola cytosol 2.53 5.98
CDX85780 Canola nucleus 9.39 5.49
Protein Annotations
Gene3D:1.25.40.10MapMan:35.2UniProt:A0A078JFE1EnsemblPlants:CDY65185ProteinID:CDY65185ProteinID:CDY65185.1
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00045343001InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734PFAM:PF00515PFAM:PF07719PFscan:PS50005PFscan:PS50293
PANTHER:PTHR22904PANTHER:PTHR22904:SF356SMART:SM00028SUPFAM:SSF48452InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sf
InterPro:TPR_1InterPro:TPR_2InterPro:TPR_repeatUniParc:UPI0004EE9642SEG:seg:
Description
BnaC04g56230DBnaC04g56230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFE1]
Coordinates
chrLK034682:-:13562..15409
Molecular Weight (calculated)
30948.8 Da
IEP (calculated)
4.337
GRAVY (calculated)
-0.886
Length
277 amino acids
Sequence
(BLAST)
001: MVLIESESDD EISVTEVPIP SRSSSSTPKT TEAKIVGGDD SEGFETASER EVSDNEEEEE EGDRKEDAIE NQEPQPSDNP EKKEDQVEAV TDVGSNQKEK
101: ALEDANEAKM EGNKLFGNGL YEDALSKYEL ALQFAQEFPE SVDLRSICHS NRAICYLKLG KYAEAIKEST KAIELNPSYT KALVRRAEAH EKLEHFEDAL
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEALA KLKEMGNTIL GKFGMSVDNF KAVKDPNTGS YSFSFQN
Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
Arabidopsis Description
TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.