CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012121_P002	Maize	cytosol	94.07	93.33
Zm00001d034423_P001	Maize	cytosol	89.33	91.13
Os10t0486900-01	Rice	cytosol	79.45	85.17
TraesCS5A01G336700.1	Wheat	cytosol	75.49	83.41
TraesCS5B01G335700.1	Wheat	cytosol	74.7	82.53
TraesCS5D01G341400.1	Wheat	cytosol	74.31	82.1
KRH09945	Soybean	cytosol, endoplasmic reticulum	18.58	81.03
Bra011197.1-P	Field mustard	cytosol	22.92	70.73
GSMUA_Achr2P02050_001	Banana	cytosol	60.87	67.54
KRH23391	Soybean	cytosol	46.64	65.92
CDX68662	Canola	endoplasmic reticulum, mitochondrion	25.69	63.73
CDY28190	Canola	extracellular	25.3	62.75
Solyc07g006180.2.1	Tomato	cytosol	58.1	56.32
KRG99844	Soybean	cytosol	58.89	55.6
VIT_11s0037g01020.t01	Wine grape	cytosol	49.8	51.64
CDX72245	Canola	cytosol	52.96	50.95
Bra032136.1-P	Field mustard	cytosol	54.94	50.18
CDY39682	Canola	cytosol	54.55	49.82
AT4G30480.2	Thale cress	cytosol	54.55	49.82
CDY65185	Canola	cytosol	54.55	49.82
PGSC0003DMT400029173	Potato	cytosol	57.31	49.49
KRH46794	Soybean	cytosol	53.36	48.91
OQU78515	Sorghum	cytosol	27.67	10.0
EES01073	Sorghum	cytosol	25.3	9.4
EES02247	Sorghum	plastid	25.3	9.36
KXG30730	Sorghum	cytosol, plastid	21.74	9.32

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A1B6Q7R4	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051879	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KXG33951	ProteinID:KXG33951
ProteinID:KXG33951.2	PFAM:PF00515	PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF356	SMART:SM00028	EnsemblPlantsGene:SORBI_3003G395100	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0009DC8FE1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:70552287..70555543

Molecular Weight (calculated)

27553.1 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.626

Length

253 amino acids

Sequence
(BLAST)

001: MVVIELEPEE PTRPSSPAAE EQAAAAAAGE AARSSSSGAP EEVAAAAAAG GEASRAAEEE EEAFEDALTD EQLREKARSQ ANDAKAEGNK LFGGGQYEEA
101: LSQYEMALQI AAELESSEDI RAACHSNRAV CFLKLGKHDE TIKECTKALE LNPTYLKALL RRAEAHEKLE HYDEAIADMK KVIEMDPSNQ QATRSLFRLE
201: PLAAEKREKM KEEMIGKLKD LGNSVLGRFG MSVDNFKAVK DPNTGSYSIQ FQK

Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)

001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN

Arabidopsis Description

TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.