Factsheet for Bra006046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78366	Canola	cytosol	99.33	99.33
Bra009058.1-P	Field mustard	cytosol, mitochondrion	80.49	64.11
AT5G10090.1	Thale cress	cytosol	82.29	61.78
Bra024360.1-P	Field mustard	mitochondrion	71.3	54.27
KRH59356	Soybean	plastid	47.09	48.95
Os02t0753500-01	Rice	cytosol	31.61	48.29
KRH43206	Soybean	cytosol, plastid	57.62	46.9
KRH31282	Soybean	plastid	56.5	43.3
KRG97591	Soybean	plastid	52.69	42.88
HORVU4Hr1G024490.1	Barley	cytosol	29.6	41.25
Solyc04g055000.2.1	Tomato	cytosol	53.14	40.37
PGSC0003DMT400053133	Potato	cytosol, plastid	53.36	39.73
GSMUA_Achr11P...	Banana	plastid	50.22	38.29
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	49.55	37.78
VIT_00s0304g00060.t01	Wine grape	plastid	60.31	37.73
Zm00001d018088_P001	Maize	cytosol	49.33	37.29
KXG30730	Sorghum	cytosol, plastid	49.1	37.12
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	47.53	37.0
TraesCS6A01G301400.1	Wheat	mitochondrion	46.86	35.19
Bra015628.1-P	Field mustard	cytosol	40.36	34.22
Bra028602.1-P	Field mustard	cytosol	82.51	33.79
HORVU6Hr1G074660.5	Barley	plastid	46.64	33.33
Bra003657.1-P	Field mustard	cytosol	37.67	32.81
GSMUA_Achr3P24690_001	Banana	cytosol	48.43	31.81
Bra007405.1-P	Field mustard	cytosol	39.46	26.15
Bra000267.1-P	Field mustard	cytosol	39.01	25.89
Bra004709.1-P	Field mustard	cytosol	36.55	24.81
Bra038116.1-P	Field mustard	cytosol	36.32	24.62
Bra030946.1-P	Field mustard	cytosol, plastid	34.75	23.13
Bra023795.1-P	Field mustard	cytosol	4.48	22.73
Bra023793.1-P	Field mustard	cytosol	20.4	22.09
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	15.47	21.17
Bra027292.1-P	Field mustard	cytosol	33.18	20.16
Bra021583.1-P	Field mustard	nucleus	32.51	19.18
Bra032136.1-P	Field mustard	cytosol	9.64	15.52
Bra011197.1-P	Field mustard	cytosol	0.22	1.22

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra006046	EnsemblPlants:Bra006046.1	EnsemblPlants:Bra006046.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4CPA8
PFAM:PF07719	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat
UniParc:UPI000253F837	SEG:seg	:	:	:	:

Description

AT5G10090 (E=1e-178) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA03:-:1739750..1741463

Molecular Weight (calculated)

49396.3 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.547

Length

446 amino acids

Sequence
(BLAST)

001: MIIDNQKAKG INGSMVRASS GNVMLFGNLG NLKQPGTAAV GNQTNVQNKE ERQTSPVAPT SVSDNQEQSG TLCREVSTRM DPETLKTMGN EDYKNGNYVE
101: ALALYDAAIA IDPKKAAYRS NKSAALAALG RILEAVFECK EAIRMEPHYH KAQHRLAYLY LRLGEVENSI YHFKHSGPEA DQEDVLKAKT VQTLLNKCTE
201: AKRLRDWNTL IKETENTIGS GADAAPHVYA LQAEAFLKSL RHQEADDAMS RCPVLDVEMS TKYYGPISSA GFLVVWAQVH MSSGRFGEAV EAIQRANKLD
301: GNNREVSMVL RRAQAVMAAR SKGNDYFKAG RFQEASAAYG EGLDHDSRNS VLLCNRAACL SKMSKFDRAV EDCTAALTVR PAYTKARLRR ADCNAKLGNW
401: ESAIRDYEIL SKETPEDEEV IRGLSEAQEQ LVKCQGHREM DQEVTE

Best Arabidopsis Sequence Match ( AT5G10090.1 )
(BLAST)

001: MADNPVEKKS RCRFLGFVFN RRGLWSKKCP ADNGSHKSTM SSSNASTATA TTANIQFTKS PCTEFNPRKL QENKVLPEPI EVQNQVQRPV SKPSSHQYPN
101: NNQLGSNGNN QPSNNNQGPV QQQQARKVPR EAIGLSGELE SMIIDNQKAK GNNGSMVRAS SSNVMLFGNL GNLKQPGPSG GNQTTIQNNG YGNTGGGYGV
201: KKTLEEERKT SVAQIPASNN QDQSGSLCRA ISTRMDPETL KIMGNEDYKN GNFAEALALY EAAISIDPKK ASYRSNKSAA LTALGRILEA VFECREAIRI
301: DPHYHRAHHR LANLYLRLGE VENSIYHFKH AGPEADQEDI SKAKMVQTHL NKCTEAKRLR DWNTLIKETE NTITTGADAA PQVYALQAEA FLKTYRHQEA
401: DDALSRCPVF DGEMSTKYYG SIGYAGFLVV WAQVHMASGR FVEAVEAIQR AGKLDGNNRE VSMVLRRAQA VTAARSRGND FFKAGRFQEA CTAYGEGLDH
501: DSRNSVLLCN RAACLSKMGQ FDRAVEDTSA ALAVRPGYTK ARLRRADCNA KLGNWESAVG DYEILRKETP EDEEVIKGLS EAQKQLVKRR GHDS

Arabidopsis Description

TPR13Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LX19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.