Factsheet for Bra003657.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68030	Canola	cytosol	98.63	99.21
Bra015628.1-P	Field mustard	cytosol	84.96	82.7
AT1G78120.1	Thale cress	cytosol	81.64	78.87
KRH15375	Soybean	cytosol	24.02	49.2
KRH08675	Soybean	cytosol, mitochondrion, plastid	28.32	43.15
Os02t0753500-01	Rice	cytosol	24.61	43.15
HORVU4Hr1G024490.1	Barley	cytosol	25.0	40.0
PGSC0003DMT400022057	Potato	plastid	33.79	39.59
Bra006046.1-P	Field mustard	cytosol	32.81	37.67
KRH62368	Soybean	cytosol	44.73	35.02
GSMUA_Achr11P...	Banana	plastid	39.06	34.19
Solyc04g073940.2.1	Tomato	cytosol	35.94	33.89
KRH53085	Soybean	cytosol	45.7	33.52
PGSC0003DMT400045666	Potato	cytosol	35.55	33.39
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	37.89	33.16
KXG30730	Sorghum	cytosol, plastid	38.09	33.05
Zm00001d018088_P001	Maize	cytosol	37.7	32.71
Bra009058.1-P	Field mustard	cytosol, mitochondrion	35.55	32.5
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	35.94	32.11
KRH16702	Soybean	nucleus	42.77	31.56
KRH18895	Soybean	cytosol	43.16	31.44
VIT_18s0001g05380.t01	Wine grape	plastid	43.36	31.4
GSMUA_Achr3P24690_001	Banana	cytosol	41.6	31.37
Bra024360.1-P	Field mustard	mitochondrion	35.55	31.06
HORVU6Hr1G074660.5	Barley	plastid	36.13	29.65
TraesCS6A01G301400.1	Wheat	mitochondrion	34.38	29.63
Bra000267.1-P	Field mustard	cytosol	33.2	25.3
Bra007405.1-P	Field mustard	cytosol	33.01	25.11
Bra004709.1-P	Field mustard	cytosol	31.64	24.66
Bra030946.1-P	Field mustard	cytosol, plastid	31.64	24.18
Bra038116.1-P	Field mustard	cytosol	30.66	23.86
Bra023793.1-P	Field mustard	cytosol	18.75	23.3
Bra023795.1-P	Field mustard	cytosol	3.91	22.73
Bra027292.1-P	Field mustard	cytosol	31.64	22.07
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	13.87	21.78
Bra021583.1-P	Field mustard	nucleus	30.47	20.63
Bra032136.1-P	Field mustard	cytosol	9.57	17.69
Bra028602.1-P	Field mustard	cytosol	36.13	16.99
Bra011197.1-P	Field mustard	cytosol	1.17	7.32

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra003657	EnsemblPlants:Bra003657.1	EnsemblPlants:Bra003657.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
UniProt:M4CHH4	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002541463
SEG:seg	:	:	:	:	:

Description

AT1G78120 (E=1e-191) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA07:+:14290616..14293131

Molecular Weight (calculated)

57407.4 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.552

Length

512 amino acids

Sequence
(BLAST)

001: MAKSKNISTS QRLGCESLLG CIFESWSPRR RKPSLPEKDR KTKDYLPPKS TTIPNPKTLP RKSTDSSSQS KPRKSSDSAR KSVSSASSRP ESKTFSPNGV
101: MGNIIVKPQP ALNSSDVAQT NSRWEGKTVN YRLCPEDLKR MGNEEYCRGR FGEALVFYER AILADPKTPT YWSNKSAALI SLGRLLEAYD ACEEALRLNP
201: NYERAHQRLA SLQLRLGEAE KALCHYNQAG KYTETRHIEQ VEDVIKCLRR CDEARRSKGW NILLKETCSV ISYGADSSPR VHALQTEALL HLQRQEEAYD
301: VYQKGTKHFD IDIYIKMFGL PITSYLLMVG AQVYIAAGRF EDAVTASRQA ARLDPSNEEV NAVDRKSRAV AAARLSGNLL FNASKFEAAC VVYTEGLEQD
401: PTNALLLCNR AASSFKIGLY EKAVEDSTLV LNLQPSYRKA RRRRADSYAK LGKWQQAIQD YEFLMMETPV DEDTRRALAV ANVRLRKQIG GNVRFKGYGS
501: GLVVVNEMGV LG

Best Arabidopsis Sequence Match ( AT1G78120.1 )
(BLAST)

001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN

Arabidopsis Description

TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.