Factsheet for HORVU3Hr1G117910.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT3G10980.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT3G10980.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G542600.1	Wheat	plasma membrane	66.34	71.23
TraesCS3B01G602800.1	Wheat	plasma membrane	65.2	66.5
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	63.24	63.34
OQU78568	Sorghum	plasma membrane, plastid	47.22	62.02
Zm00001d052297_P001	Maize	plasma membrane	44.12	60.67
CDX98836	Canola	plasma membrane	40.36	58.39
CDX70157	Canola	plasma membrane	40.36	56.91
Bra009106.1-P	Field mustard	plasma membrane	39.87	56.22
CDY00984	Canola	plastid	41.99	49.23
Bra029884.1-P	Field mustard	plastid	41.99	48.67
CDY70258	Canola	plastid	41.99	48.58
Solyc06g048810.2.1	Tomato	plasma membrane	28.92	47.07
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	40.2	46.77
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	41.5	45.12
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	41.18	45.08
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	39.87	43.81
KRH73231	Soybean	nucleus	39.87	43.73
KRH31210	Soybean	cytosol	40.03	43.36
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	18.63	42.54
GSMUA_Achr8P21270_001	Banana	cytosol	28.1	42.26
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	25.65	41.42
KRG97664	Soybean	cytosol, nucleus, peroxisome	36.44	41.37
KRH65507	Soybean	plasma membrane	37.58	41.22
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	33.82	40.99
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	41.34	35.58
PGSC0003DMT400070946	Potato	plasma membrane	8.5	34.9
HORVU4Hr1G054940.1	Barley	cytosol	29.9	31.99
HORVU6Hr1G024570.1	Barley	plasma membrane	25.49	31.71
HORVU5Hr1G047230.1	Barley	plasma membrane	26.96	30.33
HORVU5Hr1G047240.2	Barley	endoplasmic reticulum	22.55	28.57

Protein Annotations

EnsemblPlants:HORVU3Hr1G117910.1	EnsemblPlantsGene:HORVU3Hr1G117910	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF2985
InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PANTHER:PTHR31045:SF7	PFAM:PF04749	PFAM:PF11204	SEG:seg
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002957A4F	UniProt:M0ZCH2	MapMan:35.2	:

Description

No Description!

Coordinates

chrchr3H:-:699592128..699596043

Molecular Weight (calculated)

67658.4 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.314

Length

612 amino acids

Sequence
(BLAST)

001: MVAVAGAGDG NHKMIPAADD QEAAAEGPAK NKRDAKDDHH IAIQDSSQQT TDDRLILSDK TNVQDYDSFQ HHLQTPTSPP CYSTDHMLAV AGADQRHNNN
101: GSSSSSSSSS ISHHHQQQQQ QQHQHSSRSR PPPRKLQSRT RRRLAPFVRK IKWGPLWDRS KEWIKNPMNM ALFVWIVAVG ISGAILFMVM TGMLNAVLRS
201: KSHKDTWFEV NNQILNALFT LMCLYNHPRR FYHLALLCRW RAGDMAALRE TYCKGGTVKP NERRHMAVVI LLLHLNCLAQ YALCGLNLGL SRSRRPPVGV
301: GLTVSVAICA PAVASLYNNL SPLGKDYEVQ AAADDEESSS SSGSRRRLQH KIKTVERRYS LSPSPQRQGQ GETSASVVGV EMELEEEDGT SMSPEWSGGL
401: VADLWEDISL AYLSLLCSCC VFGWNAGRLG FGNAYVHAAT FVLLCLAPFF IFTLAAINID DEAARLALSL GGTLLCVLGL LYGGFWRIQM RRRFGLPGNA
501: LCCGKPDVTD CFQWLCCCPC SLAQEVRTAD AYDIVHHRMV CRRRPGDGDH QEEEEEDDDD DDDGSGSSSS RVQMQQPLRF AGVFASESDT NTVPPAVPVA
601: VGIQIQIQIQ KH

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.