Factsheet for Solyc06g048810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	88.3	59.6
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	63.56	47.33
CDX98836	Canola	plasma membrane	52.39	46.57
KRH73231	Soybean	nucleus	68.09	45.88
CDX70157	Canola	plasma membrane	52.13	45.16
Bra009106.1-P	Field mustard	plasma membrane	51.33	44.47
KRH31210	Soybean	cytosol	66.76	44.42
CDY70258	Canola	plastid	62.23	44.23
Bra029884.1-P	Field mustard	plastid	61.97	44.13
CDY00984	Canola	plastid	60.64	43.68
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	63.03	42.1
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	57.98	41.44
KRG97664	Soybean	cytosol, nucleus, peroxisome	57.71	40.26
EES19686	Sorghum	cytosol, nucleus, peroxisome	59.84	39.75
Os05t0474900-01	Rice	plasma membrane	58.51	39.71
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	59.57	39.65
OQU78568	Sorghum	plasma membrane, plastid	48.94	39.48
Zm00001d052297_P001	Maize	plasma membrane	46.01	38.88
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	56.91	38.28
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.38	37.72
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	56.38	37.72
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.12	37.54
GSMUA_AchrUn_...	Banana	cytosol	54.52	37.48
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.68	36.85
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	23.14	32.46
TraesCS3D01G542600.1	Wheat	plasma membrane	48.4	31.93
GSMUA_Achr8P21270_001	Banana	cytosol	33.51	30.96
TraesCS3B01G602800.1	Wheat	plasma membrane	48.14	30.17
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	47.87	29.46
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	47.07	28.92

Protein Annotations

EnsemblPlants:Solyc06g048810.2.1	EnsemblPlantsGene:Solyc06g048810.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:PLAC_motif_containing
PANTHER:PTHR31045	PFAM:PF04749	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002766739
UniProt:K4C5C7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6:+:31752087..31754461

Molecular Weight (calculated)

42596.3 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.095

Length

376 amino acids

Sequence
(BLAST)

001: MHPQRLYHFV LLMRWRPEDI SRLRKVYCKN GTYKPHEWTH MMVVVALLNL NCFAQYALCG LNLGYKRSVR PAIGVGICIS VAIGAPAIAG IYCMLSPLGK
101: DYDTELDEEA QLRTTAESSS ASQLRRKALE KRFSFASDEG RLVETRPQWS GGILDFWDDI SLAYLSLFCS FCVFGWNMER LGFGNMYVHI ATFLLFCMAP
201: FWIFNLAAVN IDSDTVRGIL GVTGIFLCLF GLLYGGFWRI QMRKRYNLPP YNTCCGKPSV ADCALWLFCC WCSLAQEVRT GNSYDIVEDK FCRKLDESMS
301: PLPREDGLYN TSGPPLANNS SSLPIIKSRT PNPSRFADEV HNHDRQQPFV EDESHTRGQN AITVPPTPSV IQREDA

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.