Factsheet for Solyc06g048790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	33.86	63.81
Solyc06g048810.2.1	Tomato	plasma membrane	47.33	63.56
CDX98836	Canola	plasma membrane	45.94	54.85
CDX70157	Canola	plasma membrane	45.54	53.0
Bra009106.1-P	Field mustard	plasma membrane	45.15	52.53
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	52.28	50.19
KRH73231	Soybean	nucleus	54.65	49.46
CDY70258	Canola	plastid	51.49	49.15
CDY00984	Canola	plastid	50.49	48.85
Bra029884.1-P	Field mustard	plastid	50.69	48.48
KRH31210	Soybean	cytosol	53.47	47.79
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	53.07	47.6
KRG97664	Soybean	cytosol, nucleus, peroxisome	48.71	45.64
Os05t0474900-01	Rice	plasma membrane	49.7	45.31
OQU78568	Sorghum	plasma membrane, plastid	41.58	45.06
Zm00001d052297_P001	Maize	plasma membrane	38.81	44.04
EES19686	Sorghum	cytosol, nucleus, peroxisome	49.11	43.82
GSMUA_AchrUn_...	Banana	cytosol	47.33	43.69
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	48.51	43.36
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	48.12	43.24
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	47.72	43.11
PGSC0003DMT400070946	Potato	plasma membrane	12.67	42.95
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	47.72	42.88
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	47.33	42.53
GSMUA_Achr8P21270_001	Banana	cytosol	34.06	42.26
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	57.82	41.07
TraesCS3D01G542600.1	Wheat	plasma membrane	42.77	37.89
TraesCS3B01G602800.1	Wheat	plasma membrane	42.57	35.83
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	41.19	34.04
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	40.99	33.82

Protein Annotations

EnsemblPlants:Solyc06g048790.1.1	EnsemblPlantsGene:Solyc06g048790.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF2985
InterPro:PLAC_motif_containing	ncoils:Coil	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204	SEG:seg
TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002766737	UniProt:K4C5C5	MapMan:35.2	:

Description

No Description!

Coordinates

chr6:+:31723218..31724735

Molecular Weight (calculated)

57092.3 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.088

Length

505 amino acids

Sequence
(BLAST)

001: MISAGNGGIV EEPMGKALNI STSQRELNCQ SAIPERLKPL NSDNLGSPSA KFDQMGDRRD ELPPTLPSSR PHHLRQRITK LFSRKLDWAS IRKMCKEWFK
101: KPLNIVIFIW IACVGVCSVI MLLLITGALN HALPKKSQRD TWTEVINQSL NALFGLLCLY QHPKRLSHLN LLLRWRPEDI SALRSAYCKN GTYKPNEWRN
201: MVVVVVLLNL NCFAQYAACG LNWGFKRSER PATLVGICVL AAVLSAAIAG LYCTHSSLGK DYDSELEEES QAQKIVPLEK RFSFASDKGR VVETRPQWSG
301: GILDFWDDFS TASLSLFCCF CVFGWNLERL RFGNMYIHIA TFLLFCMGPF WIFNLAAVNI DSDSVKKLLG GTGVVLSLFG LLYGGFWRIR MRKRYHLPSY
401: NTCCGKPEVA DCALWLFCCC CSLAQEVRTA NSYDIVEDKF CRKHENISPL PREEGRYTYT SATPLQTIPS PSRSADELHS PENVIIIPPS PSVIQREEEN
501: LKQKL

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.