Factsheet for VIT_13s0067g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
vacuole 1
cytosol 1
plasma membrane 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G10980.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048810.2.1	Tomato	plasma membrane	36.85	69.68
CDX98836	Canola	plasma membrane	38.4	64.54
KRH73231	Soybean	nucleus	50.21	63.98
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	49.93	63.73
CDX70157	Canola	plasma membrane	38.26	62.67
Bra009106.1-P	Field mustard	plasma membrane	37.69	61.75
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	48.8	61.63
KRH31210	Soybean	cytosol	48.95	61.59
CDY00984	Canola	plastid	45.15	61.49
CDY70258	Canola	plastid	45.71	61.44
Bra029884.1-P	Field mustard	plastid	45.43	61.17
KRG97664	Soybean	cytosol, nucleus, peroxisome	45.85	60.48
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	43.74	59.13
GSMUA_AchrUn_...	Banana	cytosol	44.73	58.14
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	41.07	57.82
Os05t0474900-01	Rice	plasma membrane	44.02	56.5
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	21.24	56.34
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	43.04	54.16
OQU78568	Sorghum	plasma membrane, plastid	35.44	54.08
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	42.48	54.02
EES19686	Sorghum	cytosol, nucleus, peroxisome	42.9	53.89
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	42.33	53.56
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	42.05	53.2
Zm00001d052297_P001	Maize	plasma membrane	33.19	53.03
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	41.77	52.85
GSMUA_Achr8P21270_001	Banana	cytosol	29.25	51.11
PGSC0003DMT400070946	Potato	plasma membrane	9.7	46.31
TraesCS3D01G542600.1	Wheat	plasma membrane	36.71	45.79
TraesCS3B01G602800.1	Wheat	plasma membrane	36.01	42.67
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	36.29	42.23
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	35.58	41.34

Protein Annotations

EntrezGene:100248412	wikigene:100248412	Gene3D:3.10.450.50	MapMan:35.1	ProteinID:CCB49818	ProteinID:CCB49818.1
InterPro:DUF2985	UniProt:F6HC94	EMBL:FN595514	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100248412	wikigene:LOC100248412	InterPro:NTF2-like_dom_sf	PFAM:PF04749	PFAM:PF07107	PFAM:PF11204
InterPro:PLAC_motif_containing	PANTHER:PTHR31045	SUPFAM:SSF54427	TIGR:TC66905	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI000210A6F3	ArrayExpress:VIT_13s0067g02190	EnsemblPlantsGene:VIT_13s0067g02190	EnsemblPlants:VIT_13s0067g02190.t01	unigene:Vvi.24372	InterPro:Wun1-like
RefSeq:XP_002274097	RefSeq:XP_002274097.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:-:1228901..1242590

Molecular Weight (calculated)

79610.4 Da

IEP (calculated)

7.297

GRAVY (calculated)

-0.083

Length

711 amino acids

Sequence
(BLAST)

001: MVSTDNGELK EEIEESNGSK VEGLVPLHIS TSQRGLISDE DTKKGFKKRF LGRVRLLKFG SAKFRQLAEG RDELSRAVPS SSHHIRERFN EVFMRKIDWV
101: SLRKMCKEWI RDPMNMALFA WIVCVAVSGA ILFLVMTGML NHELPKKSQR DAWFEVNNQI LNALFTLMCL YQHPKRFYHL VLLCRWRPED ISKLRKIYCK
201: NGTYKPHEWA HMMVVVILLH INCFAQYALC GLNLGYRRSE RPAIGVGICI AVAIGAPAIA GVYTIVSPLG KEYDSETDEE AQVPITTDSN RSSQLRRKSM
301: ERRFSFASRD EQRVVESRPE WSGGVLDFWD DISLAYLSLF CSFCVFGWNM ERLGFGNMYV HIATFLLFCM APFWIFNLAA VNIDNDTARA ALGTMGLILC
401: VFGLLYGGFW RIQMRKRFNL PAYHFCCGEP AVTDCALWLC CCWCSLSQEV RTGNSYDIVE NTFCRKKMDG GSQLPISPLP REDGVSQIRS GSSSPLGNSA
501: SPLKIIAASP SSSRASKGYY SPERNLPVVE EESPAGELAN SPEILEEVDA SNQRVVRALY EALGSRDVDT VHRLLAADLE WWFHGPPSHQ FMMRLLTGVS
601: SDESFVFEPL AFASFGSTVL AEGCDHSGSI AWVHAWTVTD GVITQVREYF NTSLTVTRLS NSDFTTSPSS SISAASSSST PSPPSRHCPS VWESSFSDRV
701: GKSVPGLVLA I

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.