CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	CDY42827	AT2G42580.1	19000166
AT3G10980.1	CDY51514	AT2G42580.1	19000166
AT3G10980.1	CDY55390	AT2G42580.1	19000166
AT3G10980.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70258	Canola	plastid	94.25	93.01
Bra029884.1-P	Field mustard	plastid	91.38	90.34
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	80.27	74.42
CDX98836	Canola	plasma membrane	55.75	68.79
CDX70157	Canola	plasma membrane	56.32	67.74
Solyc06g048810.2.1	Tomato	plasma membrane	43.68	60.64
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	59.58	55.83
OQU78568	Sorghum	plasma membrane, plastid	49.62	55.58
KRH73231	Soybean	nucleus	58.43	54.66
Zm00001d052297_P001	Maize	plasma membrane	45.79	53.71
GSMUA_AchrUn_...	Banana	cytosol	55.75	53.2
KRH31210	Soybean	cytosol	56.7	52.39
KRG97664	Soybean	cytosol, nucleus, peroxisome	52.87	51.21
Os05t0474900-01	Rice	plasma membrane	53.64	50.54
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	48.85	50.49
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.21	50.36
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.02	50.18
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	53.64	49.82
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	53.07	49.55
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	53.45	49.38
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	25.1	48.88
EES19686	Sorghum	cytosol, nucleus, peroxisome	52.87	48.76
TraesCS3D01G542600.1	Wheat	plasma membrane	49.81	45.61
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.49	45.15
TraesCS3B01G602800.1	Wheat	plasma membrane	50.0	43.5
GSMUA_Achr8P21270_001	Banana	cytosol	33.91	43.49
PGSC0003DMT400070946	Potato	plasma membrane	12.07	42.28
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	49.43	42.23
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	49.23	41.99

Protein Annotations

EnsemblPlants:CDY00984	EnsemblPlantsGene:GSBRNA2T00111003001	GO:A0A078EJQ4	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045
PFAM:PF04749	PFAM:PF11204	ProteinID:CDY00984	ProteinID:CDY00984.1	SEG:seg	TIGRFAMs:TIGR01571
TMHMM:TMhelix	UniParc:UPI0004EB500B	MapMan:35.2	:	:	:

Description

BnaC05g42160D

Coordinates

chrLK031923:+:480475..482694

Molecular Weight (calculated)

58512.9 Da

IEP (calculated)

8.559

GRAVY (calculated)

0.010

Length

522 amino acids

Sequence
(BLAST)

001: MGSNPEITSL KKSNALCPLD VSSSFSSRRT LISSDGNKLK SWSSSVTTVL PSPSAKFMKM AEQRDEVSRS VKTSSIRERI SGVLHRKIDW TSLANMGKEW
101: IRNPINMALF LWILAVAVSG AILFMVMTGM LNHALPKKSE RDAWFEVNNQ ILNGLFTLMC LYQHPKRFYH LVLLCRWGRD DVAKLRKVYC KNGSYKPHEW
201: MHVMVVVLLL HLNCFAQYAL CGLNVGYRRS ERPPIGVAVC ISAAIGAPAA AALYTMLSPL GRDYDDDEEN QLQGSVNSRV SLERRYSFAS NGMVPVSDPQ
301: WSGGVLDIWD DISLAYLSLF CTFCVFGWNM ERVGFGNMYV HIATFILFCL APFFIFTLAA VNIDDETVRE ALGVSGILLC VFGLLYGGFW RIQMRKRFKL
401: PSYKFCFGNA AVADCTLWLF CCWCSLAQEV RTADSYEIVE DKFCQRVQQE KSLVSPLPRE DGVFDPKVGI GSSPRNVSGA NTPSRFWKEV HSPNVQTPRG
501: NGEGNSEVVL TPPSPLSIRR EA

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.