Factsheet for TraesCS1A01G298700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	95.91	95.91
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	92.35	92.35
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	88.97	89.45
Os05t0474900-01	Rice	plasma membrane	75.62	76.71
EES19686	Sorghum	cytosol, nucleus, peroxisome	71.17	70.67
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	69.57	69.2
CDX98836	Canola	plasma membrane	43.59	57.92
CDX70157	Canola	plasma membrane	43.77	56.68
Solyc06g048810.2.1	Tomato	plasma membrane	37.72	56.38
GSMUA_AchrUn_...	Banana	cytosol	54.8	56.31
Bra009106.1-P	Field mustard	plasma membrane	43.42	56.22
CDY70258	Canola	plastid	51.42	54.63
CDY00984	Canola	plastid	50.36	54.21
Bra029884.1-P	Field mustard	plastid	50.36	53.6
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	52.67	53.14
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	52.85	52.75
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	49.29	52.66
KRH73231	Soybean	nucleus	49.82	50.18
KRH31210	Soybean	cytosol	50.18	49.91
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	43.24	48.12
KRG97664	Soybean	cytosol, nucleus, peroxisome	45.55	47.5
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	22.42	47.01
PGSC0003DMT400070946	Potato	plasma membrane	11.74	44.3
KRH65507	Soybean	plasma membrane	43.77	44.09
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	29.72	44.06
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.2	42.05
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	45.37	41.73
TraesCS4A01G115700.1	Wheat	nucleus, peroxisome, plasma membrane	31.14	30.86
TraesCS5A01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	27.05	30.28
TraesCS3A01G347300.1	Wheat	plasma membrane	29.89	29.73
TraesCS6A01G127700.1	Wheat	peroxisome, plasma membrane, vacuole	25.8	28.83
TraesCS5A01G149800.1	Wheat	plasma membrane, plastid	26.33	25.13

Protein Annotations

EnsemblPlants:TraesCS1A01G298700.1	EnsemblPlantsGene:TraesCS1A01G298700	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749
PFAM:PF11204	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr1A:-:493510075..493511763

Molecular Weight (calculated)

63132.4 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.210

Length

562 amino acids

Sequence
(BLAST)

001: MVPNGNGNLK ADTQQVESKT SENDPGVTDV NSLSTQNVSK QGNQRSGCLN FVNRFSSGAH FKKLGPSPSV KFRQLALQRD DFSRSIHSDN HDNHEHFRLI
101: RKINWGHLWA MGKDWIRQPL NMALFVWIAV VSVSGAILFM VMTGMLNHAL PSKSERDAWF EVNNQILNAL FTLMCLYQHP MRIYNFVLLC RWDQKDILRL
201: RKEYCKNGTY KPNEWMHMMV VVVFLNLNCF AQYALCGLNI GYRRSERPPL GVAVTISFAF GAALFASVYN IVSPLGKDYD AELREGDPEA QAGVTSTEGA
301: RPATSGRSLE RRYSFLQSDE RRFVESRPEW VGGLSDFWDS ITIAYLSIFC SCCVFGWNVQ RLGFGNMYVH IATFLLFCLA PFFIFNLAAV NINNETLREA
401: LGLTGIALCF FGLLYGGFWR IQMRKRFNLP GNPFCCRNPD VTDCFQWLCC CSCSLAQEVR TADYYDIAEE RSYRGQVNGE SQRVMSPLAR EDGLPLFKST
501: PASPYRSSTG TASQSIFIME SPSAPRRSSG ATPPGSSPAN GGDRAMKAPA PSVLHREGED ES

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.