CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	KRH22291	AT2G42580.1	19000166
AT3G10980.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31210	Soybean	cytosol	85.53	81.59
KRH73231	Soybean	nucleus	72.17	69.71
Solyc06g048810.2.1	Tomato	plasma membrane	40.26	57.71
CDX98836	Canola	plasma membrane	43.78	55.79
CDX70157	Canola	plasma membrane	44.9	55.76
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	56.96	55.12
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	53.62	54.94
Bra009106.1-P	Field mustard	plasma membrane	44.16	54.84
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	56.03	53.64
CDY00984	Canola	plastid	51.21	52.87
CDY70258	Canola	plastid	51.58	52.55
Bra029884.1-P	Field mustard	plastid	50.46	51.52
GSMUA_AchrUn_...	Banana	cytosol	51.76	51.01
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	24.3	48.88
Os05t0474900-01	Rice	plasma membrane	50.09	48.74
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	45.64	48.71
OQU78568	Sorghum	plasma membrane, plastid	41.74	48.28
Zm00001d052297_P001	Maize	plasma membrane	39.15	47.42
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	48.42	46.19
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	47.87	45.91
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.48	45.85
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	47.5	45.8
EES19686	Sorghum	cytosol, nucleus, peroxisome	48.05	45.76
PGSC0003DMT400070946	Potato	plasma membrane	12.62	45.64
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	47.5	45.55
KRH65507	Soybean	plasma membrane	47.12	45.52
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	46.94	45.02
GSMUA_Achr8P21270_001	Banana	cytosol	33.58	44.47
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	30.43	43.27
TraesCS3D01G542600.1	Wheat	plasma membrane	42.67	40.35
TraesCS3B01G602800.1	Wheat	plasma membrane	42.3	38.0
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	43.04	37.97
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	41.37	36.44

Protein Annotations

EMBL:ACUP02010805	EnsemblPlants:KRG97664	EnsemblPlantsGene:GLYMA_18G022600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204	ProteinID:KRG97664
ProteinID:KRG97664.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002949C34	UniProt:I1MYX9
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1647502..1649169

Molecular Weight (calculated)

60930.6 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.144

Length

539 amino acids

Sequence
(BLAST)

001: MVSVDDGIVN PNDEIEKSNG SKVNEFASMD ISATQKSYLN SEDPQRRLQG TLISSSVTNR INFLKFGSAS AKFKRLATER DQVSISVPSP RSKSLRSRFS
101: GMFAQKLDWA SVKKMCMEWI RNPVNMALFV WIICVAVSGA ILFLVMTGML NGVLPRKSKR NAWFEVNNQI LNAVFTLMCL YQHPKRFYHL VYCKNVTYKP
201: HEWTHMMVVV ILLHVNCFAQ YALCGLNLGY KRSERPAIGV GICISFAIAG LYTILSPLGK DYDCEMDEEA QVQITASQGK EQLREKPTEK KYSFASKDQQ
301: RVVENRPKWS GGILDIWNDI SLAYLSLFCT FCVLGWNMKR LGFGNMYVHI AIFMLFCMAP FWIFLLASVN IDDDNVRQAL AAVGIILCFL GLLYGGFWRI
401: QMRKRFNLPA YDFCFGKPSA SDCTLWLPCC WCSLAQEART RNNYDLVEDK FSRKETDTSD QPSISPLARE DVVSTRSGTS SPMGSTSNSS PYMMKTSSSP
501: NSSNVLKGYY SPDKMLSTLN EDNCERGQDG TMNPLYAQK

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.