Factsheet for Zm00001d010607_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G10980.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G10980.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G10980.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G10980.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G10980.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G10980.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G10980.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19686	Sorghum	cytosol, nucleus, peroxisome	89.38	89.22
Os05t0474900-01	Rice	plasma membrane	73.63	75.09
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	69.2	69.57
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	67.96	68.69
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	68.32	68.68
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	68.14	68.51
Solyc06g048810.2.1	Tomato	plasma membrane	39.65	59.57
CDX98836	Canola	plasma membrane	43.19	57.68
CDX70157	Canola	plasma membrane	43.36	56.45
Bra009106.1-P	Field mustard	plasma membrane	43.19	56.22
GSMUA_AchrUn_...	Banana	cytosol	53.63	55.39
Zm00001d052297_P001	Maize	plasma membrane	43.36	55.06
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	53.63	54.4
KRH73231	Soybean	nucleus	53.1	53.76
CDY70258	Canola	plastid	50.09	53.5
CDY00984	Canola	plastid	49.38	53.45
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	49.38	53.04
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	52.39	52.58
Bra029884.1-P	Field mustard	plastid	49.03	52.46
KRH31210	Soybean	cytosol	50.8	50.8
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	23.36	49.25
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	43.36	48.51
KRG97664	Soybean	cytosol, nucleus, peroxisome	46.19	48.42
PGSC0003DMT400070946	Potato	plasma membrane	12.74	48.32
KRH65507	Soybean	plasma membrane	44.42	44.98
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	30.09	44.85
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	54.16	43.04
Zm00001d043026_P001	Maize	cytosol, peroxisome, plasma membrane	30.8	32.22
Zm00001d023227_P001	Maize	plasma membrane	27.43	31.06
Zm00001d028809_P001	Maize	nucleus, peroxisome, plasma membrane	30.62	30.67
Zm00001d038030_P001	Maize	cytosol, nucleus, plasma membrane	27.96	30.21
Zm00001d023228_P001	Maize	plasma membrane	26.19	25.92

Protein Annotations

EMBL:BT043001	EMBL:BT088377	EnsemblPlants:Zm00001d010607_P001	EnsemblPlants:Zm00001d010607_T001	EnsemblPlantsGene:Zm00001d010607	EntrezGene:100274421
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045
PFAM:PF04749	PFAM:PF11204	ProteinID:AQK94448.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI00017B786D	UniProt:B4G0W3	MapMan:35.2	:	:	:

Description

PLAC8 family protein

Coordinates

chr8:-:121751703..121753400

Molecular Weight (calculated)

63950.8 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.155

Length

565 amino acids

Sequence
(BLAST)

001: MASNGNGNLK ADIQQVESTA SDNVQGATGV NTLATQGVSR NEKRWSGFRD FWNRLCTGPK LKKLGPSTSF KFQQIALQRD EFSRSIHSDN HVSHEHFQFI
101: RKINWEQLWV MARNWIKEPM NMALFVWIAC VAVSGAILFL VMTGMLNRVL PSKSKRDTWF EVNNQILNAL FTLMCLYQHP QRIYNFVLLC RWEQQDILRL
201: RKIYCKNGTY KPNEWMHMMV VVILLNLNCF AQYALCGLNV GYRRSERPAI GVGLTISVAI GAAAFAGLYN IISPLGKDYD TEHPDIDQEA QIHATSTESG
301: RPTSRLQSFE RRYSFIQSDE RRFVERRPQW VGGLMDFWDQ ISIAYLSLFC SCCVFGWNMQ RLGFGNMYVH IATFLLFCLA PFFIFVLAAG NVDNGSVQVA
401: LVLTGLFLCF FGLLYGGFWR IQMRKRFNLP ENSFCCHNPD ASDCFHWLFC CSCSLAQEVR TADYYDITED RSHTGQVVGE SHRIMSPLQR EDGLPLFKSS
501: PSSPYRSGNV SPSIFILESP SPSAPRRSSG SSPQGGGSPT MGHRAMKAPV PSVLQRESGP DHAQG

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.