CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	CDY42827	AT2G42580.1	19000166
AT3G10980.1	CDY51514	AT2G42580.1	19000166
AT3G10980.1	CDY55390	AT2G42580.1	19000166
AT3G10980.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029884.1-P	Field mustard	plastid	94.71	94.89
CDY00984	Canola	plastid	93.01	94.25
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	79.21	74.42
CDX98836	Canola	plasma membrane	55.01	68.79
CDX70157	Canola	plasma membrane	55.58	67.74
Solyc06g048810.2.1	Tomato	plasma membrane	44.23	62.23
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	59.92	56.91
OQU78568	Sorghum	plasma membrane, plastid	49.53	56.22
KRH73231	Soybean	nucleus	58.41	55.38
Zm00001d052297_P001	Maize	plasma membrane	45.75	54.38
GSMUA_AchrUn_...	Banana	cytosol	55.39	53.56
KRH31210	Soybean	cytosol	56.14	52.57
Os05t0474900-01	Rice	plasma membrane	54.44	51.99
KRG97664	Soybean	cytosol, nucleus, peroxisome	52.55	51.58
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	49.15	51.49
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.63	51.42
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	54.44	51.25
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	53.88	50.98
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	54.06	50.89
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	53.5	50.09
EES19686	Sorghum	cytosol, nucleus, peroxisome	53.12	49.65
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	24.39	48.13
TraesCS3D01G542600.1	Wheat	plasma membrane	49.72	46.14
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.44	45.71
GSMUA_Achr8P21270_001	Banana	cytosol	34.03	44.23
TraesCS3B01G602800.1	Wheat	plasma membrane	49.34	43.5
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	48.96	42.39
PGSC0003DMT400070946	Potato	plasma membrane	11.91	42.28
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	48.58	41.99

Protein Annotations

EnsemblPlants:CDY70258	EnsemblPlantsGene:GSBRNA2T00097634001	GO:A0A078JRS9	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204	ProteinID:CDY70258
ProteinID:CDY70258.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0004EEB826	UniProt:A0A078JRS9
MapMan:35.2	:	:	:	:	:

Description

BnaA05g37060DBnaA05g37060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRS9]

Coordinates

chrLK041620:-:318..2546

Molecular Weight (calculated)

59444.8 Da

IEP (calculated)

8.201

GRAVY (calculated)

-0.041

Length

529 amino acids

Sequence
(BLAST)

001: MGSNPEIDEP NTSLKKSNAL CPLDVSSSSS RRTLISSDGN KLKSWSSSVT TVLPSPSAKF MKLAEQRDEV SRSVKTSSIR ERISGVLHRK IDWTSLANMG
101: KEWIRNPINM ALFLWILAVA VSGAILFMVM TGMLNHALPK KSERDAWFEV NNQILNGLFT LMCLYQHPKR FYHLVLLCRW GRDDVAKLRK VYCKNESYKP
201: HEWMHMMVVV LLLHLNCFAQ YALCGLNVGF RRSERPPIGV AVCISAAIGA PAAAALYTML SPLGRDYDDD DDEENQLQGS VNSRVSLERR YSFASNGNRM
301: VPVSDPQWSG GVLDIWDDIS LAYLSLFCSF CVFGWNMERV GFGNMYVHIA TFILFCLAPF FIFTLAAVNI DNETVREALG VSGILLCVFG LLYGGFWRIQ
401: MRKRFKLPSY KFCFGNAAVA DCTLWLFCCW CSLAQEVRTA DSYEIVEDKF CQRVQQEKSL VSPLPREDGL FDPKVGIGSS PRSVSGANTP SRFWKEVHSP
501: NVQTPRGKDE GNSEVVLTPP SPLSIHREV

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.