Factsheet for GSMUA_AchrUn_randomP12060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G10980.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G10980.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G10980.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G10980.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G10980.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98836	Canola	plasma membrane	47.17	60.99
CDX70157	Canola	plasma membrane	47.35	59.68
Bra009106.1-P	Field mustard	plasma membrane	46.8	58.99
Os05t0474900-01	Rice	plasma membrane	58.14	57.4
CDY00984	Canola	plastid	53.2	55.75
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	56.67	55.46
CDY70258	Canola	plastid	53.56	55.39
Bra029884.1-P	Field mustard	plastid	53.2	55.11
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.31	54.8
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	56.12	54.63
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	56.12	54.63
Solyc06g048810.2.1	Tomato	plasma membrane	37.48	54.52
EES19686	Sorghum	cytosol, nucleus, peroxisome	56.12	54.24
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	55.58	54.0
KRH73231	Soybean	nucleus	54.84	53.76
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	55.39	53.63
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	54.11	53.14
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	51.01	53.04
KRH31210	Soybean	cytosol	54.48	52.74
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	25.78	52.61
KRG97664	Soybean	cytosol, nucleus, peroxisome	51.01	51.76
KRH65507	Soybean	plasma membrane	50.46	49.46
GSMUA_Achr8P21270_001	Banana	cytosol	35.83	48.16
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	43.69	47.33
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	32.36	46.7
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.14	44.73
PGSC0003DMT400070946	Potato	plasma membrane	11.15	40.94
GSMUA_Achr7P22250_001	Banana	endoplasmic reticulum, plasma membrane	11.7	36.36
GSMUA_Achr7P22270_001	Banana	endoplasmic reticulum, plasma membrane	11.52	35.8
GSMUA_Achr11P...	Banana	cytosol	36.01	35.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	32.91	35.64
GSMUA_Achr11P...	Banana	mitochondrion	26.69	26.45
GSMUA_Achr5P28010_001	Banana	cytosol, peroxisome, plasma membrane	25.23	26.39
GSMUA_Achr11P...	Banana	nucleus	32.91	19.21

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12060_001	EnsemblPlants:GSMUA_AchrUn_randomT12060_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12060_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PANTHER:PTHR31045:SF15	PFAM:PF04749	PFAM:PF11204
SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI0002961644	UniProt:M0U8G5	MapMan:35.2

Description

SAG20, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12060_001]

Coordinates

chrchrUn_random:-:57722906..57725061

Molecular Weight (calculated)

62319.8 Da

IEP (calculated)

7.901

GRAVY (calculated)

-0.031

Length

547 amino acids

Sequence
(BLAST)

001: MEPNGNKGFA DEIQEGLGSV RSPNDKDQIS FHIQSSQVEI VDEEKYQSKF LGFVRTIPRG ARFMKLGPSP SAKFRQLAYE RDELSRAIHS EHSPRERFHM
101: PLVRKIDWVS LWLMCKEWIR NPMNMALFLW ITCVAISGAI LFMVMTGMLN KALPSKSQRD TWFEVNNQIL NALFTLMCLY QHPKRFYHLV LLCRWEPKDI
201: LALRKIYCKN GTYKPNEWMH MMVVVILLHL NCFAQYALCG LNLGYHRSQR PAIGVGLCIS VAIAAPAFAS VYKILSPLGK DYETEIDQER YSFVAREGQS
301: FPASRPKWIG GLFDLWDDIS LAYLSVFCSC CVFGWNMERL GFGNMYVHIM TFLLFCLAPF FIFNLAAINL NNEAVREALG ISGILLCFFG LLYGGFWRIQ
401: MRKKFNLPAH TFCCGQPSVT DCFQWLVCCS CSLAQEVRTA DHYDMVEDKL CEKQTDGGGQ LVSASPCREE GTPLFASTPS SPYQGQSSPL FRLEYKSSPI
501: RSSAGQSPGT HLPIINDENE NLTSDHMVNI VKLTDILKFY YGMKSNL

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.