CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	KRH22291	AT2G42580.1	19000166
AT3G10980.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97664	Soybean	cytosol, nucleus, peroxisome	81.59	85.53
KRH73231	Soybean	nucleus	73.81	74.73
Solyc06g048810.2.1	Tomato	plasma membrane	44.42	66.76
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	59.65	60.5
CDX98836	Canola	plasma membrane	44.96	60.05
CDX70157	Canola	plasma membrane	45.66	59.45
Bra009106.1-P	Field mustard	plasma membrane	44.96	58.53
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	52.92	56.84
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	56.64	56.84
CDY00984	Canola	plastid	52.39	56.7
CDY70258	Canola	plastid	52.57	56.14
Bra029884.1-P	Field mustard	plastid	51.86	55.49
GSMUA_AchrUn_...	Banana	cytosol	52.74	54.48
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	25.84	54.48
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	47.79	53.47
OQU78568	Sorghum	plasma membrane, plastid	43.19	52.36
Os05t0474900-01	Rice	plasma membrane	51.15	52.17
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	50.8	50.8
GSMUA_Achr8P21270_001	Banana	cytosol	36.46	50.61
EES19686	Sorghum	cytosol, nucleus, peroxisome	50.62	50.53
PGSC0003DMT400070946	Potato	plasma membrane	13.27	50.34
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	49.91	50.18
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	49.91	50.18
Zm00001d052297_P001	Maize	plasma membrane	39.47	50.11
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	49.56	50.09
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	49.03	49.29
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.59	48.95
KRH65507	Soybean	plasma membrane	47.96	48.57
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	30.8	45.91
TraesCS3D01G542600.1	Wheat	plasma membrane	45.31	44.91
TraesCS3B01G602800.1	Wheat	plasma membrane	44.6	42.0
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	44.25	40.92
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	43.36	40.03

Protein Annotations

EMBL:ACUP02007129	EnsemblPlants:KRH31210	EnsemblPlantsGene:GLYMA_11G234400	EntrezGene:100811964	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204
ProteinID:KRH31210	ProteinID:KRH31210.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI000233D415
UniProt:I1LMW6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:32964027..32966583

Molecular Weight (calculated)

64208.4 Da

IEP (calculated)

8.586

GRAVY (calculated)

-0.173

Length

565 amino acids

Sequence
(BLAST)

001: MVSVDNGIGN SKDEIEESNG NKVNEFTSID ISTTHKTFVN SEDPQRRLQG TLGSSVPNRI NFLKFDSASA KFRRLATERD QVSLSVPSPR PKSLRSRFSG
101: MFAQKLDWGS VKKMFIEWIR SPMNMALFVW IVCVAVSGAI LFLVMTGMLN GLLPRKSQRN TWFEINNQIL NALFTLMCLY QHPKRFYHLV LLIRWRPTDI
201: SRLRKVYCKN GTYKPHEWTH MMVVVILLHV NCFAQYALCG LNLGYKRSER PAIGVGICIS FAIAAPAIAG LYTILSPLGK DYDCEMDEEA QVQVTASQGQ
301: EQLREKPFEK NYSFASKDDR QRFVENRPKW SGGILDIWND ISLAYLSLFC TFCVFGWNME RLGFGNMYVH IATFMLFCMA PFWIFFLASV NIDDDNVRQA
401: LAAVGIILCF LGLLYGGFWR IQMRKRFNLP AYDFCFGKHS VSDCILWLCC CWCTLAQEAR TGNNYDLVED KFSRKETDTR DEKPSISPLA REDVVSTKSG
501: TSSPLGSTSN SSPYVMKTSS PPNSSNVLKG YYTSDRMLSN LNQENCERGK DGTMNPPAPS LIQRE

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.