Factsheet for TraesCS3A01G537100.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G542600.1	Wheat	plasma membrane	76.92	82.46
TraesCS3B01G602800.1	Wheat	plasma membrane	74.63	76.0
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	63.34	63.24
OQU78568	Sorghum	plasma membrane, plastid	45.99	60.3
Zm00001d052297_P001	Maize	plasma membrane	43.54	59.78
CDX98836	Canola	plasma membrane	40.26	58.16
CDX70157	Canola	plasma membrane	40.26	56.68
Bra009106.1-P	Field mustard	plasma membrane	39.77	55.99
CDY00984	Canola	plastid	42.23	49.43
CDY70258	Canola	plastid	42.39	48.96
Bra029884.1-P	Field mustard	plastid	41.57	48.11
Solyc06g048810.2.1	Tomato	plasma membrane	29.46	47.87
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	40.92	47.53
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	42.72	46.36
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	41.73	45.37
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	40.75	44.7
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	19.48	44.4
KRH73231	Soybean	nucleus	40.43	44.27
KRH31210	Soybean	cytosol	40.92	44.25
KRG97664	Soybean	cytosol, nucleus, peroxisome	37.97	43.04
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	26.02	41.95
GSMUA_Achr8P21270_001	Banana	cytosol	27.82	41.77
KRH65507	Soybean	plasma membrane	38.13	41.76
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	34.04	41.19
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	42.23	36.29
TraesCS4A01G115700.1	Wheat	nucleus, peroxisome, plasma membrane	30.77	33.16
PGSC0003DMT400070946	Potato	plasma membrane	8.02	32.89
TraesCS5A01G149900.1	Wheat	cytosol, peroxisome, plasma membrane	26.51	32.27
TraesCS6A01G127700.1	Wheat	peroxisome, plasma membrane, vacuole	24.88	30.22
TraesCS3A01G347300.1	Wheat	plasma membrane	27.0	29.2
TraesCS5A01G149800.1	Wheat	plasma membrane, plastid	26.68	27.67

Protein Annotations

EnsemblPlants:TraesCS3A01G537100.1	EnsemblPlantsGene:TraesCS3A01G537100	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PANTHER:PTHR31045:SF7
PFAM:PF04749	PFAM:PF11204	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3A:-:749184190..749186025

Molecular Weight (calculated)

67267.9 Da

IEP (calculated)

8.274

GRAVY (calculated)

-0.222

Length

611 amino acids

Sequence
(BLAST)

001: MVAGGGTHKR PAADIMHQEE PANTDAKNDH HIAIYFIDSP QQTQRQVLGD KTNGQEDYSF QHHLQTPSSP PCYSTDHMLR AAADQRHYNT NNGSPSSSSS
101: SSSSSSSSSS SSSSSSSSSS SSSSSSSSSS QQQQQQQHEH SSRPPRRRQS RTRRRLAAAV PFVRKIKWGP LWDKSKEWIK NPMNMALFVW IVAVGVSGAI
201: LFMVMTGMLN AVLRTKSHKD TWFEVNNQIL NALFTLMCLY NHPRRFYHLA LLCRWRAGDM AALREVYCKG GTVKPNERRH MMVVILLLHL NCLAQYALCG
301: LNLGLSRTRR PPVGVGLTVS VAICAPAVAS MYNNLSPLGK DYEVQAADDE EQESSSSGSR QRLQHKTVER RYSFSPSPPQ RQGLEMAAVV VAVGAEEDGM
401: LSPEWSGGLV ADLWEDISLA YLSLFCSCCV FGWNAGRLGF GNAYVHAATF ILLCLAPFFI FTLAAINIDN EAARLALSLG GTLLCVLGLL YGGFWRIQMR
501: RRFGLPGSGF CCGRPDVTDC FQWLFCCPCS LAQEVRTADA YDIVQHRMVS RRRPGDGDDQ EEDASSSSRV QMQQPLRFAG VFASDGGVTN TNTIVLNSAL
601: SILAADLFQM L

Best Arabidopsis Sequence Match ( AT5G05350.1 )
(BLAST)

001: MGSVDEVEIS KTRVSCPPAL STSHKILISE EKPRRWSESS LPDVSNRIKL LKFGSPSARL KRMAEERDEV SRSVNSSSSS SHDVVSSRKI EWACLMKMGK
101: QWLQNPLNMV MFLWIFVVAV SGAILFMVMT GMLNHALPKK SQRDVWFEVN NQILNALFTL MCLYQHPKRF YHLVLLCRWK QDDVTTLRKI FCKNGTYKPN
201: EWIHMMVVVL LLHLNCFAQY ALCGLNLGYR RSERPAIGVA ICISFAIAAP TAAGLYTILS PLGKDYDPQG DEENQVQAVG EGPVSNRKLS LERRYSFASN
301: DVSNPEWREG VLDIWEDISL AYLSLFCTFC LFGWNMERIG FGNMYVHIAT FVLFCLAPFF IFNLAAINID NEMVRDALGY TGIVLCLFGL LYGGFWRIQM
401: RKRFKLPGYN ICCGRPAIAD CTLWLFCCWC SLAQEVRTAN SYEIVEDKFC KRREENSKID DEVVVSALPR EDGVFDPSCL PKKMTTTMIA SSTLSPSRQK
501: DETCLGEKGD EALSPPSPPF IHREAS

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q5XV52]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.