Factsheet for PGSC0003DMT400017002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048810.2.1	Tomato	plasma membrane	59.6	88.3
CDX98836	Canola	plasma membrane	47.4	62.41
KRH73231	Soybean	nucleus	62.48	62.37
CDX70157	Canola	plasma membrane	46.86	60.14
CDY70258	Canola	plastid	56.91	59.92
KRH31210	Soybean	cytosol	60.5	59.65
CDY00984	Canola	plastid	55.83	59.58
Bra009106.1-P	Field mustard	plasma membrane	46.32	59.45
Bra029884.1-P	Field mustard	plastid	56.19	59.28
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	55.66	58.94
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	58.35	57.73
KRG97664	Soybean	cytosol, nucleus, peroxisome	55.12	56.96
PGSC0003DMT400070946	Potato	plasma membrane	14.9	55.7
GSMUA_AchrUn_...	Banana	cytosol	53.14	54.11
Os05t0474900-01	Rice	plasma membrane	53.5	53.79
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	54.4	53.63
EES19686	Sorghum	cytosol, nucleus, peroxisome	54.4	53.53
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	53.68	53.49
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.5	53.02
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.14	52.67
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	52.96	52.49
OQU78568	Sorghum	plasma membrane, plastid	42.91	51.29
Zm00001d052297_P001	Maize	plasma membrane	40.57	50.79
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.73	49.93
GSMUA_Achr8P21270_001	Banana	cytosol	36.09	49.39
TraesCS3D01G542600.1	Wheat	plasma membrane	44.52	43.51
TraesCS3B01G602800.1	Wheat	plasma membrane	43.99	40.83
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	44.7	40.75
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	43.81	39.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400017002	EnsemblPlantsGene:PGSC0003DMG400006642	EntrezGene:102581124	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204	PGSC:PGSC0003DMG400006642
RefSeq:XP_006357292.1	RefSeq:XP_006357293.1	RefSeq:XP_015168846.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix
UniParc:UPI000294D7B6	UniProt:M1A8G3	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006642]

Coordinates

chr6:-:34682488..34688601

Molecular Weight (calculated)

62866.0 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.101

Length

557 amino acids

Sequence
(BLAST)

001: MTSAGNGEHH GIVEEPMGGQ VKTHVPLNVS TSQRGLVSNE NSQSHFQGST LAIPKRLKFL NFGNLGSPSS KFQQIADQRD DFSQTVPSSG SLHLRQRITR
101: LLSRKLDWPA IRKMCKEWFR NPLNIVLFIW IVCVAVSGAI LFLVMTGMLN HAIPKKSMRD TWFEVNNQIL NALFTLMCLY QHPQRLYHFV LLMRWRPEDI
201: SRLRKVYCKN GTYKPHEWTH MMVVVALLNL NCFAQYALCG LNLGYKRSER PAIGVGICIS VAIGAPAIAG VYCMLSPLGK DYDTELDEEA QLRTTPTESS
301: SASQLRRKAL EKRFSFASDE GRLVETRPQW SGGILDFWDD ISLAYLSLFC SFCVFGWNME RLGFGNMYVH IATFLLFCMA PFWIFNLAAV NIDSDTVRGI
401: LGVTGIFLCL FGLLYGGFWR IQMRKRYNLP PYNNCCGKPS VADCALWLFC CWCSLAQEVR TGNSYDIVED KFCRKLDESI SPLPREDGLY NTSGPPLANN
501: SSSFPIIKSS TPNPSRFAAE VHSPDKQQPF VEDKSHTRGQ NAIMIPPTPS VIQREDA

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.