Factsheet for TraesCS3D01G542600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G10980.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G602800.1	Wheat	plasma membrane	81.05	77.0
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	82.46	76.92
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	71.23	66.34
OQU78568	Sorghum	plasma membrane, plastid	50.53	61.8
Zm00001d052297_P001	Maize	plasma membrane	47.19	60.45
CDX98836	Canola	plasma membrane	44.04	59.34
CDX70157	Canola	plasma membrane	44.21	58.06
Bra009106.1-P	Field mustard	plasma membrane	43.68	57.37
CDY00984	Canola	plastid	45.61	49.81
CDY70258	Canola	plastid	46.14	49.72
Bra029884.1-P	Field mustard	plastid	45.26	48.86
Solyc06g048810.2.1	Tomato	plasma membrane	31.93	48.4
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	44.04	47.72
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	46.49	47.07
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	45.44	46.09
KRH73231	Soybean	nucleus	44.74	45.7
KRH31210	Soybean	cytosol	44.91	45.31
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	43.51	44.52
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	20.7	44.03
GSMUA_Achr8P21270_001	Banana	cytosol	30.7	43.0
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	37.89	42.77
KRG97664	Soybean	cytosol, nucleus, peroxisome	40.35	42.67
KRH65507	Soybean	plasma membrane	41.58	42.47
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	28.07	42.22
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	45.79	36.71
PGSC0003DMT400070946	Potato	plasma membrane	8.95	34.23
TraesCS3D01G340900.1	Wheat	cytosol, peroxisome, plasma membrane	30.18	33.4
TraesCS4D01G189700.1	Wheat	nucleus, peroxisome, plasma membrane	32.98	33.39
TraesCS5D01G143100.1	Wheat	cytosol, peroxisome, plasma membrane	28.95	32.87
TraesCS5D01G143200.1	Wheat	plasma membrane	29.12	30.51
TraesCS6D01G117700.1	Wheat	plasma membrane	26.84	30.42

Protein Annotations

EnsemblPlants:TraesCS3D01G542600.1	EnsemblPlantsGene:TraesCS3D01G542600	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PANTHER:PTHR31045:SF7
PFAM:PF04749	PFAM:PF11204	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3D:-:613588845..613592390

Molecular Weight (calculated)

63155.5 Da

IEP (calculated)

7.930

GRAVY (calculated)

-0.217

Length

570 amino acids

Sequence
(BLAST)

001: MVAGGGTQKR PADDIMHQEE PANTDAKNDH IAIYFIDSPQ QTERGVLGDK TNGQDYSFQQ HLETPSSPPC YSTDHMLGAD QRYYNSNNGS PSSSSSSSSS
101: QQQQHERSSH SPRRRQSTRR RLAAAVPFVR KIDWGSLWGK SKEWIKNPMN MALFVWIVAV GISGAILFMV MTGMLNAVLR TKSQKDTWFE VNNQILNALF
201: TLMCLYNHPR RFYHLALLCR WRATDMAALR EVYCKGGTVK PNERRHMMVV VLLLHLNCLA QYALCGLNLG LPRSRRPPVG VGLTVSVAIC APAVASMYNN
301: LSPLGKDYEV QAADDEEQES SSLGSRQRLQ HKTVERRYSF SPSPPQRQGE MGAVVIAVAA EEDGMSPEWS GGLVADLWED ISLAYLSLFC SCCVFGWNAG
401: RLGFGNAYVH AATFILLCLA PFFIFTLAAI NIDNEAARLA LSLGGTLLCV LGLLYGGFWR IQMRRRFGLP GNGFCCGRPD VTDCFQWLCC CPCALAQEVR
501: TADAYDIVHH RMVCRRDSRR PGDGDDHEEE GASSSSRVQM QQPLRFAGVF ASDTSTSTIP PAVPVGIQKQ

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.