Factsheet for Bra029884.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
plasma membrane 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G10980.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70258	Canola	plastid	94.89	94.71
CDY00984	Canola	plastid	90.34	91.38
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	79.36	74.42
Bra009106.1-P	Field mustard	plasma membrane	55.3	67.28
Solyc06g048810.2.1	Tomato	plasma membrane	44.13	61.97
OQU78568	Sorghum	plasma membrane, plastid	49.81	56.44
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	59.28	56.19
KRH73231	Soybean	nucleus	57.95	54.84
Zm00001d052297_P001	Maize	plasma membrane	46.21	54.83
GSMUA_AchrUn_...	Banana	cytosol	55.11	53.2
KRH31210	Soybean	cytosol	55.49	51.86
Os05t0474900-01	Rice	plasma membrane	53.41	50.9
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	48.48	50.69
KRG97664	Soybean	cytosol, nucleus, peroxisome	51.52	50.46
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.6	50.36
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	53.41	50.18
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	52.84	49.91
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	53.03	49.82
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	52.46	49.03
EES19686	Sorghum	cytosol, nucleus, peroxisome	52.27	48.76
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	23.48	46.27
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.17	45.43
TraesCS3D01G542600.1	Wheat	plasma membrane	48.86	45.26
GSMUA_Achr8P21270_001	Banana	cytosol	34.47	44.72
TraesCS3B01G602800.1	Wheat	plasma membrane	48.67	42.83
HORVU3Hr1G117910.1	Barley	cytosol, nucleus, plasma membrane	48.67	41.99
PGSC0003DMT400070946	Potato	plasma membrane	11.74	41.61
TraesCS3A01G537100.1	Wheat	cytosol, nucleus, plasma membrane	48.11	41.57

Protein Annotations

EnsemblPlants:Bra029884.1	EnsemblPlants:Bra029884.1-P	EnsemblPlantsGene:Bra029884	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749
PFAM:PF11204	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	UniParc:UPI000254775B	UniProt:M4EM64
MapMan:35.2	:	:	:	:	:

Description

AT3G10980 (E=2e-232) | unknown protein

Coordinates

chrA05:-:21863120..21864706

Molecular Weight (calculated)

59375.8 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.045

Length

528 amino acids

Sequence
(BLAST)

001: MGSNPEIDEP NTSLKKTKPL CPLDVSSSSS SRRTLISSDG NKLKSWSSFT TVLPSPSAKF MKLAEQRDEV SRSVKTSSIR ERISGVLHRK IDWTSLANMG
101: KEWIRNPINM ALFLWILAVA VSGAILFMVM TGMLNHALPK KSERDAWFEV NNQILNGLFT LMCLYQHPKR FYHLVLLCRW GRDDVAKLRK VYCKNGSYKP
201: HEWMHMMVVV LLLHLNCFAQ YALCGLNVGY RRSERPPIGV AVCISAAIGA PAAAALYTML SPLGRDYDDD DEENQLQGSV NSRVSLERRY SFASNGNRMV
301: PVSDPQWSGG VLDIWDDISL AYLSLFCTFC VFGWNMERVG FGNMYVHIAT FILFCLAPFF IFTLAAVNID NETVREALGV SGILLCVFGL LYGGFWRIQM
401: RKRFKLPSYK FCFGNAAVAD CTLWLFCCWC SLAQEVRTAD SYEIVEDKFC QRVQQEKSLV SPLPREDGVF DPKVGIGSSP RSVSGANTPS RFWKEVHSPN
501: VQTPRGKDEG NSEVVLTPPS PLSIHREV

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.