CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10980.1	EES01073	AT2G42580.1	19000166
AT3G10980.1	EES02247	AT2G42580.1	19000166
AT3G10980.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010607_P001	Maize	cytosol, nucleus, plasma membrane, plastid	89.22	89.38
Os05t0474900-01	Rice	plasma membrane	74.73	76.35
TraesCS1A01G298700.1	Wheat	cytosol, nucleus, plasma membrane, plastid	70.67	71.17
HORVU1Hr1G070270.1	Barley	cytosol, peroxisome, plasma membrane	70.14	71.02
TraesCS1B01G308300.1	Wheat	cytosol, peroxisome, plasma membrane	69.79	70.28
TraesCS1D01G292600.1	Wheat	cytosol, nucleus, plasma membrane, plastid	69.43	69.93
Solyc06g048810.2.1	Tomato	plasma membrane	39.75	59.84
CDX98836	Canola	plasma membrane	43.64	58.39
CDX70157	Canola	plasma membrane	43.29	56.45
OQU78568	Sorghum	plasma membrane, plastid	46.47	56.44
Bra009106.1-P	Field mustard	plasma membrane	43.11	56.22
GSMUA_AchrUn_...	Banana	cytosol	54.24	56.12
PGSC0003DMT400017002	Potato	cytosol, nucleus, plasma membrane	53.53	54.4
AT5G05350.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	49.47	53.23
KRH73231	Soybean	nucleus	52.47	53.23
CDY70258	Canola	plastid	49.65	53.12
CDY00984	Canola	plastid	48.76	52.87
AT3G10980.1	Thale cress	cytosol, peroxisome, plasma membrane	52.12	52.4
Bra029884.1-P	Field mustard	plastid	48.76	52.27
KRH31210	Soybean	cytosol	50.53	50.62
Solyc06g048780.1.1	Tomato	cytosol, nucleus, plasma membrane, plastid	23.5	49.63
Solyc06g048790.1.1	Tomato	cytosol, peroxisome, plasma membrane	43.82	49.11
PGSC0003DMT400070946	Potato	plasma membrane	12.72	48.32
KRG97664	Soybean	cytosol, nucleus, peroxisome	45.76	48.05
KRH76069	Soybean	peroxisome, plasma membrane, plastid, vacuole	30.74	45.91
KRH65507	Soybean	plasma membrane	45.23	45.88
VIT_13s0067g02190.t01	Wine grape	cytosol, peroxisome, plasma membrane	53.89	42.9
EES01683	Sorghum	cytosol, peroxisome, plasma membrane	30.92	34.11
EER92399	Sorghum	cytosol, nucleus, plasma membrane	32.51	32.06
KXG22798	Sorghum	cytosol, peroxisome, plasma membrane	27.74	31.85
EES18024	Sorghum	cytosol, nucleus, plasma membrane	27.39	30.39
KXG22799	Sorghum	mitochondrion	26.68	24.24

Protein Annotations

EnsemblPlants:EES19686	EnsemblPlantsGene:SORBI_3009G171700	EntrezGene:8064127	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF2985	InterPro:PLAC_motif_containing	PANTHER:PTHR31045	PFAM:PF04749	PFAM:PF11204	ProteinID:EES19686
ProteinID:EES19686.1	RefSeq:XP_002441256.1	SEG:seg	TIGRFAMs:TIGR01571	TMHMM:TMhelix	unigene:Sbi.12722
UniParc:UPI0001A88ED8	UniProt:C5YZQ7	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:52702521..52705995

Molecular Weight (calculated)

64044.1 Da

IEP (calculated)

8.560

GRAVY (calculated)

-0.128

Length

566 amino acids

Sequence
(BLAST)

001: MASNGNGNLK ADIEPVESIA SDNVPGATGI NNLASQGVSE RGKRWSGFRN FWKRLCTGPQ LKKFGSSTSF RFQQIAIQRD EFSRSIHSDN HVSHEHFQFI
101: RRINWEQLWL MAKNWIKEPM NMALFVWIAV VAVSGAILFL VMTGMLNRVL PSKSQRDTWF EVNNQILNAL FTLMCLYQHP QRIYNFVLLC RWEQKDILRL
201: RKIYCKNGTY KPNEWMHMMV VVILLNLNCF AQYALCGLNL GYRRSQRPPI GVGLTISVAI GAAAFAGLYN IISPLGKDYD TEHADIDQEA QIDVASTESG
301: RPTSRVKSFE RRYSFIQSDE RRFVERRPQW VGGLMDFWDQ ISIAYLSLFC SCCVFGWNMQ RLGFGNMYVH IATFLLFCLA PFFIFVLAAG NVDNESLQVA
401: LVLTGLFLCF FGLLYGGFWR IQMRKRFNLP ENNFCCHNPD ASDCFQWLFC CSCSLAQEVR TADYYDITED RSPTGQVTGE TPRVMMSPLQ REDGLALFKS
501: SPSSPYRSGN ASPSIFILES PSAPRRSSGS SPQGGSPTMG DRVMKAPAPS VLQREGGPDH GKGVIQ

Best Arabidopsis Sequence Match ( AT3G10980.1 )
(BLAST)

001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA

Arabidopsis Description

PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.