Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 2
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98836 | Canola | plasma membrane | 61.03 | 75.89 |
| CDX70157 | Canola | plasma membrane | 61.22 | 74.19 |
| Bra009106.1-P | Field mustard | plasma membrane | 60.65 | 73.5 |
| AT3G10980.1 | Thale cress | cytosol, peroxisome, plasma membrane | 69.2 | 64.65 |
| Solyc06g048810.2.1 | Tomato | plasma membrane | 41.44 | 57.98 |
| PGSC0003DMT400017002 | Potato | cytosol, nucleus, plasma membrane | 58.94 | 55.66 |
| KRH73231 | Soybean | nucleus | 57.41 | 54.12 |
| OQU78568 | Sorghum | plasma membrane, plastid | 47.53 | 53.65 |
| KRG97664 | Soybean | cytosol, nucleus, peroxisome | 54.94 | 53.62 |
| KRH31210 | Soybean | cytosol | 56.84 | 52.92 |
| Zm00001d052297_P001 | Maize | plasma membrane | 44.68 | 52.81 |
| Solyc06g048790.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.19 | 52.28 |
| Os05t0474900-01 | Rice | plasma membrane | 53.99 | 51.26 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.04 | 51.01 |
| Solyc06g048780.1.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 25.29 | 49.63 |
| EES19686 | Sorghum | cytosol, nucleus, peroxisome | 53.23 | 49.47 |
| TraesCS1D01G292600.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.85 | 49.47 |
| Zm00001d010607_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 53.04 | 49.38 |
| TraesCS1A01G298700.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.66 | 49.29 |
| HORVU1Hr1G070270.1 | Barley | cytosol, peroxisome, plasma membrane | 52.09 | 49.02 |
| TraesCS1B01G308300.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.09 | 48.75 |
| GSMUA_Achr8P21270_001 | Banana | cytosol | 35.36 | 45.7 |
| TraesCS3D01G542600.1 | Wheat | plasma membrane | 47.72 | 44.04 |
| VIT_13s0067g02190.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 59.13 | 43.74 |
| TraesCS3B01G602800.1 | Wheat | plasma membrane | 47.53 | 41.67 |
| PGSC0003DMT400070946 | Potato | plasma membrane | 11.6 | 40.94 |
| TraesCS3A01G537100.1 | Wheat | cytosol, nucleus, plasma membrane | 47.53 | 40.92 |
| HORVU3Hr1G117910.1 | Barley | cytosol, nucleus, plasma membrane | 46.77 | 40.2 |
Protein Annotations
| MapMan:35.2 | EntrezGene:830417 | ProteinID:AED90862.1 | ArrayExpress:AT5G05350 | EnsemblPlantsGene:AT5G05350 | RefSeq:AT5G05350 |
| TAIR:AT5G05350 | RefSeq:AT5G05350-TAIR-G | EnsemblPlants:AT5G05350.1 | TAIR:AT5G05350.1 | EMBL:AY735670 | Unigene:At.51049 |
| InterPro:DUF2985 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_196154.1 | PFAM:PF04749 |
| PFAM:PF11204 | InterPro:PLAC_motif_containing | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31045 |
| PANTHER:PTHR31045:SF15 | UniProt:Q5XV52 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0000162462 | SEG:seg |
Description
PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q5XV52]
Coordinates
chr5:+:1585249..1587517
Molecular Weight (calculated)
59685.5 Da
IEP (calculated)
7.883
GRAVY (calculated)
-0.030
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVDEVEIS KTRVSCPPAL STSHKILISE EKPRRWSESS LPDVSNRIKL LKFGSPSARL KRMAEERDEV SRSVNSSSSS SHDVVSSRKI EWACLMKMGK
101: QWLQNPLNMV MFLWIFVVAV SGAILFMVMT GMLNHALPKK SQRDVWFEVN NQILNALFTL MCLYQHPKRF YHLVLLCRWK QDDVTTLRKI FCKNGTYKPN
201: EWIHMMVVVL LLHLNCFAQY ALCGLNLGYR RSERPAIGVA ICISFAIAAP TAAGLYTILS PLGKDYDPQG DEENQVQAVG EGPVSNRKLS LERRYSFASN
301: DVSNPEWREG VLDIWEDISL AYLSLFCTFC LFGWNMERIG FGNMYVHIAT FVLFCLAPFF IFNLAAINID NEMVRDALGY TGIVLCLFGL LYGGFWRIQM
401: RKRFKLPGYN ICCGRPAIAD CTLWLFCCWC SLAQEVRTAN SYEIVEDKFC KRREENSKID DEVVVSALPR EDGVFDPSCL PKKMTTTMIA SSTLSPSRQK
501: DETCLGEKGD EALSPPSPPF IHREAS
101: QWLQNPLNMV MFLWIFVVAV SGAILFMVMT GMLNHALPKK SQRDVWFEVN NQILNALFTL MCLYQHPKRF YHLVLLCRWK QDDVTTLRKI FCKNGTYKPN
201: EWIHMMVVVL LLHLNCFAQY ALCGLNLGYR RSERPAIGVA ICISFAIAAP TAAGLYTILS PLGKDYDPQG DEENQVQAVG EGPVSNRKLS LERRYSFASN
301: DVSNPEWREG VLDIWEDISL AYLSLFCTFC LFGWNMERIG FGNMYVHIAT FVLFCLAPFF IFNLAAINID NEMVRDALGY TGIVLCLFGL LYGGFWRIQM
401: RKRFKLPGYN ICCGRPAIAD CTLWLFCCWC SLAQEVRTAN SYEIVEDKFC KRREENSKID DEVVVSALPR EDGVFDPSCL PKKMTTTMIA SSTLSPSRQK
501: DETCLGEKGD EALSPPSPPF IHREAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.