Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00984 | Canola | plastid | 74.42 | 80.27 |
| Bra029884.1-P | Field mustard | plastid | 74.42 | 79.36 |
| CDY70258 | Canola | plastid | 74.42 | 79.21 |
| AT5G05350.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 64.65 | 69.2 |
| Solyc06g048810.2.1 | Tomato | plasma membrane | 42.1 | 63.03 |
| KRH73231 | Soybean | nucleus | 59.15 | 59.68 |
| PGSC0003DMT400017002 | Potato | cytosol, nucleus, plasma membrane | 57.73 | 58.35 |
| OQU78568 | Sorghum | plasma membrane, plastid | 46.89 | 56.65 |
| KRH31210 | Soybean | cytosol | 56.84 | 56.64 |
| KRG97664 | Soybean | cytosol, nucleus, peroxisome | 53.64 | 56.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.0 | 55.58 |
| Zm00001d052297_P001 | Maize | plasma membrane | 43.34 | 54.83 |
| Os05t0474900-01 | Rice | plasma membrane | 53.46 | 54.33 |
| TraesCS1D01G292600.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 53.29 | 53.38 |
| Solyc06g048790.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 47.6 | 53.07 |
| TraesCS1A01G298700.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 52.75 | 52.85 |
| TraesCS1B01G308300.1 | Wheat | cytosol, peroxisome, plasma membrane | 52.58 | 52.67 |
| HORVU1Hr1G070270.1 | Barley | cytosol, peroxisome, plasma membrane | 52.22 | 52.59 |
| Zm00001d010607_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 52.58 | 52.39 |
| EES19686 | Sorghum | cytosol, nucleus, peroxisome | 52.4 | 52.12 |
| Solyc06g048780.1.1 | Tomato | cytosol, nucleus, plasma membrane, plastid | 24.16 | 50.75 |
| VIT_13s0067g02190.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 61.63 | 48.8 |
| GSMUA_Achr8P21270_001 | Banana | cytosol | 34.81 | 48.16 |
| TraesCS3D01G542600.1 | Wheat | plasma membrane | 47.07 | 46.49 |
| TraesCS3B01G602800.1 | Wheat | plasma membrane | 46.36 | 43.5 |
| TraesCS3A01G537100.1 | Wheat | cytosol, nucleus, plasma membrane | 46.36 | 42.72 |
| PGSC0003DMT400070946 | Potato | plasma membrane | 11.19 | 42.28 |
| HORVU3Hr1G117910.1 | Barley | cytosol, nucleus, plasma membrane | 45.12 | 41.5 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820269 | UniProt:A0A178V928 | ProteinID:AEE74987.1 | ArrayExpress:AT3G10980 | EnsemblPlantsGene:AT3G10980 |
| RefSeq:AT3G10980 | TAIR:AT3G10980 | RefSeq:AT3G10980-TAIR-G | EnsemblPlants:AT3G10980.1 | TAIR:AT3G10980.1 | EMBL:AY062465 |
| EMBL:BT000119 | InterPro:DUF2985 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_187709.5 | ProteinID:OAP02406.1 | PFAM:PF04749 | PFAM:PF11204 |
| InterPro:PLAC_motif_containing | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0025281 | PANTHER:PTHR31045 |
| UniProt:Q8W4N1 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI00000AC0E7 | SEG:seg | : |
Description
PLAC8 family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4N1]
Coordinates
chr3:+:3438212..3441299
Molecular Weight (calculated)
63237.2 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.143
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNCDGNLK AEIEESNGSS GKNTKVPPCP LDVSTSRRTL IGDGKPRRWS ISALPDASSR FQLLKFGSPS AKFKKMAEDR DEVSRSVTSS SNGSSHNFRE
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA
101: RISGVLHRKI DWSSLMNMGK EWIRNPINMA LFVWILVVAV SGAILFMVMT GMLNHALPKK SQRDAWFEVN NQILNGLFTL MCLYQHPKRF YHLVLLCRWK
201: HDDITKLRKA YCKDGTYKPN EWMHIMVVVI LLHLNCFAQY ALCGLNVGYR RSERPPIGVA ICISAAIGAP AVAGLYTILS PLGKDYNDSN EDEENQLKQR
301: EEGSVNRRFT LERRYSFASA STGVGDGMVP VSDPQWSGGI LDIWDDISLA YLSLFCTFCV FGWNMERVGF GNMYVHIATF ILFCLAPFFI FNLAAVNIDN
401: ETVREALGIS GILLCVFGLL YGGFWRIQMR KRFKLPSYNF CFGRAAIADC ALWLCCCWCS LAQEVRTANS YEIVEDKFCQ RKEEKNMVSP NLVSPLPRED
501: GVFDPRFGLG SSPKNISGAS SPSPSRFWKE AHSPNVQTPR EKEEVKSDVA LTPPSPLSIH REA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.