Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G352000.1 | Wheat | nucleus | 89.68 | 88.11 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 90.04 | 87.24 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 90.04 | 86.94 |
| EES19824 | Sorghum | cytosol | 70.46 | 65.78 |
| Os05t0519300-01 | Rice | cytosol | 69.75 | 64.05 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 59.07 | 63.36 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 46.98 | 45.99 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 43.42 | 44.53 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 43.06 | 43.53 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 42.7 | 38.84 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 41.64 | 38.61 |
| CDY29898 | Canola | nucleus | 38.79 | 36.95 |
| Bra024209.1-P | Field mustard | nucleus | 38.79 | 36.95 |
| CDX92863 | Canola | nucleus | 37.72 | 35.93 |
| KRH25597 | Soybean | nucleus | 36.65 | 35.89 |
| CDY13861 | Canola | nucleus | 37.72 | 35.81 |
| CDX81975 | Canola | nucleus | 37.72 | 35.81 |
| Bra031136.1-P | Field mustard | nucleus | 37.37 | 35.71 |
| CDY05782 | Canola | nucleus | 37.72 | 35.69 |
| Bra036492.1-P | Field mustard | nucleus | 37.72 | 35.69 |
| AT4G32480.1 | Thale cress | nucleus | 36.3 | 35.54 |
| CDY18979 | Canola | nucleus | 37.72 | 35.45 |
| CDY31947 | Canola | nucleus | 37.37 | 35.35 |
| KRH10888 | Soybean | mitochondrion | 37.72 | 35.33 |
| PGSC0003DMT400076442 | Potato | nucleus | 37.72 | 35.1 |
| Bra026262.1-P | Field mustard | nucleus | 37.01 | 34.78 |
| CDY49659 | Canola | nucleus | 37.01 | 34.78 |
| AT2G20670.1 | Thale cress | nucleus | 36.3 | 34.69 |
| KRH21430 | Soybean | mitochondrion, nucleus | 36.65 | 34.11 |
| Solyc02g078150.2.1 | Tomato | nucleus | 37.37 | 34.09 |
| PGSC0003DMT400047228 | Potato | nucleus | 33.81 | 33.45 |
| Solyc03g006410.2.1 | Tomato | cytosol | 35.94 | 33.22 |
| KRH50053 | Soybean | mitochondrion | 37.72 | 32.92 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 35.23 | 32.35 |
| KRH20449 | Soybean | mitochondrion | 37.72 | 32.22 |
| Solyc02g078160.2.1 | Tomato | nucleus | 32.74 | 30.46 |
| Solyc07g053900.2.1 | Tomato | cytosol | 34.16 | 30.0 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 22.78 | 26.34 |
| HORVU4Hr1G073730.1 | Barley | peroxisome, plastid | 28.11 | 25.08 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 23.84 | 22.87 |
| HORVU5Hr1G105950.2 | Barley | plastid | 30.96 | 21.38 |
| HORVU3Hr1G093260.1 | Barley | plastid | 25.62 | 17.78 |
| HORVU3Hr1G115940.1 | Barley | plastid | 22.78 | 15.13 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G076120.1 | EnsemblPlantsGene:HORVU1Hr1G076120 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF7 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000B47E48D | UniProt:A0A287GAP3 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr1H:-:513214552..513216222
Molecular Weight (calculated)
30093.6 Da
IEP (calculated)
7.753
GRAVY (calculated)
-0.271
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVAEAGEEM SLSNMVLGFY EEAERERWPE DDTTTIGSDD ERSGRAGDAE SSAFWAEQLS HLHEVLGKTS SAESRIRADT EEAVRQARPA TAAAGICSCA
101: IRTTAGGGCR GCTLRSVAGR LRDAGYDSAV CRSRWARSPE FPAGEHSYVD VVVPTKSGKA VRVVVEPSFR AEFAMARGGA GYGALVAALP EVFVGRAEKL
201: RAVVGAMCAA AKRCARESSL HMAPWRKRRY MEAKWLGTPD RLLPAAGAPV TAGSPESEKQ RRFMASMLTL DFGGRSAVEV A
101: IRTTAGGGCR GCTLRSVAGR LRDAGYDSAV CRSRWARSPE FPAGEHSYVD VVVPTKSGKA VRVVVEPSFR AEFAMARGGA GYGALVAALP EVFVGRAEKL
201: RAVVGAMCAA AKRCARESSL HMAPWRKRRY MEAKWLGTPD RLLPAAGAPV TAGSPESEKQ RRFMASMLTL DFGGRSAVEV A
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.