Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | KRH22291 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | KRH27037 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 55.75 | 52.81 |
| AT4G32480.1 | Thale cress | nucleus | 47.39 | 47.39 |
| PGSC0003DMT400047228 | Potato | nucleus | 46.69 | 47.18 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 44.6 | 46.72 |
| KRH10888 | Soybean | mitochondrion | 48.43 | 46.33 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 44.6 | 46.04 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 45.64 | 45.64 |
| CDX92863 | Canola | nucleus | 46.69 | 45.42 |
| CDY05782 | Canola | nucleus | 46.69 | 45.12 |
| Bra024209.1-P | Field mustard | nucleus | 46.34 | 45.08 |
| CDY29898 | Canola | nucleus | 46.34 | 45.08 |
| KRH21430 | Soybean | mitochondrion, nucleus | 47.39 | 45.03 |
| CDX81975 | Canola | nucleus | 46.34 | 44.93 |
| Bra036492.1-P | Field mustard | nucleus | 46.34 | 44.78 |
| CDY31947 | Canola | nucleus | 46.34 | 44.78 |
| CDY18979 | Canola | nucleus | 46.34 | 44.48 |
| CDY13861 | Canola | nucleus | 45.64 | 44.26 |
| Bra031136.1-P | Field mustard | nucleus | 45.3 | 44.22 |
| CDY49659 | Canola | nucleus | 45.99 | 44.15 |
| Bra026262.1-P | Field mustard | nucleus | 45.99 | 44.15 |
| EES01469 | Sorghum | nucleus | 42.86 | 43.62 |
| AT2G20670.1 | Thale cress | nucleus | 44.6 | 43.54 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 39.02 | 42.75 |
| Solyc07g053900.2.1 | Tomato | cytosol | 46.69 | 41.88 |
| Zm00001d043444_P001 | Maize | nucleus | 40.77 | 41.2 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 39.72 | 40.86 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 39.02 | 40.43 |
| KRH20449 | Soybean | mitochondrion | 46.34 | 40.43 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 38.68 | 39.78 |
| KRH50053 | Soybean | mitochondrion | 42.16 | 37.58 |
| EES19824 | Sorghum | cytosol | 39.37 | 37.54 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.89 | 36.65 |
| Os05t0519300-01 | Rice | cytosol | 38.68 | 36.27 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.89 | 36.01 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.24 | 35.86 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 35.89 | 35.4 |
| KRH27801 | Soybean | cytosol | 29.62 | 30.91 |
| KRH77753 | Soybean | cytosol | 28.57 | 30.15 |
| KRH37828 | Soybean | cytosol | 13.24 | 25.17 |
| KRH59552 | Soybean | cytosol | 21.25 | 22.43 |
| KRH43403 | Soybean | cytosol | 19.86 | 21.51 |
| KRH51155 | Soybean | cytosol | 21.6 | 20.88 |
| KRH32089 | Soybean | cytosol | 24.39 | 20.65 |
| KRG95606 | Soybean | cytosol | 24.74 | 19.67 |
| KRH71351 | Soybean | cytosol | 24.39 | 19.5 |
| KRH01670 | Soybean | nucleus | 20.91 | 19.48 |
| KRH70457 | Soybean | cytosol | 20.56 | 19.16 |
| KRH11519 | Soybean | mitochondrion | 19.86 | 18.27 |
| KRH46613 | Soybean | mitochondrion, nucleus | 17.77 | 17.89 |
| KRH69065 | Soybean | cytosol | 22.65 | 17.76 |
| KRH07392 | Soybean | nucleus | 18.47 | 17.73 |
| KRH34359 | Soybean | plastid | 23.69 | 17.57 |
| KRH36535 | Soybean | endoplasmic reticulum, golgi | 20.56 | 17.56 |
| KRG92439 | Soybean | plastid | 24.04 | 17.56 |
| KRH31637 | Soybean | cytosol | 23.0 | 17.23 |
Protein Annotations
| EMBL:ACUP02007294 | EnsemblPlants:KRH25597 | EnsemblPlantsGene:GLYMA_12G114200 | EntrezGene:100815222 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF33 | PFAM:PF04720 | ProteinID:KRH25596.1 | ProteinID:KRH25597 | ProteinID:KRH25597.1 | SEG:seg |
| TIGRFAMs:TIGR01615 | UniParc:UPI000233CBDA | UniProt:I1LS37 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr12:+:11290782..11294451
Molecular Weight (calculated)
32854.2 Da
IEP (calculated)
7.259
GRAVY (calculated)
-0.496
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKEFSTIPV AGRSSDDVSF ADTVFGFWDS SNSSNDRDDD DDDDDDDETI CTAENGKAFW EEQYQLLKAI LCRTSSYETK VRQATKGVLR ELNISEMLCI
101: CRRAEVAKSC RNCLLREVCD RLLNLGYNCA ICKSKWRSSP EIPSGEHTYL EVRNNVSNTK RGAVKVVIEL YFRAEFEMAR ANEEYNKLIK RLPEVFVGKS
201: DRLRALVKIM CSASKKCMKE KKMHIGPWRK HKYMQAKWFS TCEMSTTESL PTIMNSAQQP KSKASMLTFD LLDNIIHGLH CTTVEVV
101: CRRAEVAKSC RNCLLREVCD RLLNLGYNCA ICKSKWRSSP EIPSGEHTYL EVRNNVSNTK RGAVKVVIEL YFRAEFEMAR ANEEYNKLIK RLPEVFVGKS
201: DRLRALVKIM CSASKKCMKE KKMHIGPWRK HKYMQAKWFS TCEMSTTESL PTIMNSAQQP KSKASMLTFD LLDNIIHGLH CTTVEVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.