Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25597 | Soybean | nucleus | 52.81 | 55.75 |
| AT4G32480.1 | Thale cress | nucleus | 51.16 | 54.01 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 54.79 | 53.72 |
| Bra024209.1-P | Field mustard | nucleus | 51.82 | 53.22 |
| CDY29898 | Canola | nucleus | 51.82 | 53.22 |
| CDX92863 | Canola | nucleus | 51.16 | 52.54 |
| Bra036492.1-P | Field mustard | nucleus | 51.16 | 52.19 |
| CDY05782 | Canola | nucleus | 50.83 | 51.85 |
| CDY31947 | Canola | nucleus | 50.83 | 51.85 |
| CDY18979 | Canola | nucleus | 50.83 | 51.51 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 46.53 | 51.46 |
| AT2G20670.1 | Thale cress | nucleus | 49.84 | 51.36 |
| CDX81975 | Canola | nucleus | 50.16 | 51.35 |
| CDY13861 | Canola | nucleus | 49.84 | 51.01 |
| Bra026262.1-P | Field mustard | nucleus | 50.16 | 50.84 |
| CDY49659 | Canola | nucleus | 50.16 | 50.84 |
| Bra031136.1-P | Field mustard | nucleus | 49.17 | 50.68 |
| PGSC0003DMT400047228 | Potato | nucleus | 46.86 | 50.0 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 45.54 | 49.64 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 46.86 | 49.48 |
| EES01469 | Sorghum | nucleus | 44.22 | 47.52 |
| Zm00001d043444_P001 | Maize | nucleus | 43.89 | 46.83 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 39.6 | 45.8 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 41.58 | 45.16 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 40.92 | 44.44 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 40.59 | 44.4 |
| Solyc07g053900.2.1 | Tomato | cytosol | 46.2 | 43.75 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 38.61 | 41.64 |
| EES19824 | Sorghum | cytosol | 41.25 | 41.53 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 37.95 | 39.66 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 36.96 | 39.16 |
| Os05t0519300-01 | Rice | cytosol | 39.27 | 38.89 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 37.29 | 38.83 |
| VIT_18s0001g06070.t01 | Wine grape | nucleus | 24.75 | 27.99 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 24.75 | 26.6 |
| VIT_12s0059g01640.t01 | Wine grape | nucleus | 22.44 | 22.59 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 19.8 | 21.74 |
| VIT_13s0019g01100.t01 | Wine grape | nucleus | 18.48 | 20.59 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 16.83 | 18.82 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 23.76 | 18.65 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 23.76 | 18.14 |
Protein Annotations
| EntrezGene:100248895 | wikigene:100248895 | MapMan:35.2 | EMBL:AM463769 | ProteinID:CAN65796 | ProteinID:CAN65796.1 |
| ProteinID:CBI21862 | ProteinID:CBI21862.3 | UniProt:E0CTE7 | EMBL:FN595235 | EntrezGene:LOC100248895 | wikigene:LOC100248895 |
| InterPro:PDDEXK-like | PFAM:PF04720 | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | TIGRFAMs:TIGR01615 | UniParc:UPI00015CA065 |
| ArrayExpress:VIT_12s0028g03560 | EnsemblPlantsGene:VIT_12s0028g03560 | EnsemblPlants:VIT_12s0028g03560.t01 | RefSeq:XP_002274226 | RefSeq:XP_002274226.1 | SEG:seg |
Description
No Description!
Coordinates
chr12:-:4360339..4361597
Molecular Weight (calculated)
33631.3 Da
IEP (calculated)
7.608
GRAVY (calculated)
-0.388
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGVAARLPV TPWSSDDTLK FSGDSESLGD MVFGFLGEDS SGSSCNSGGG WVHGEDCGDG ADGEEGFDNV EGSKAFWEEQ DQLVQAILCR TSSIESKIRQ
101: VTKEALRELK LKETYCVCRR RVAGVCQNCA EKEVWGQLQT AGYNSAICKS KWKSSPDIPS GEHSYMEVVD RSSAKKGEVR VVIELNFRAE FEMARASAEY
201: NLLVSRLPEV FVGKSERLKA LIKILCHAAK KCMKEKKMHM GPWRKHKYMQ AKWFGTCERT APAPMSPVDF PGRLPRQRVS MLTFDLLENL PAAGLNFKAV
301: EVV
101: VTKEALRELK LKETYCVCRR RVAGVCQNCA EKEVWGQLQT AGYNSAICKS KWKSSPDIPS GEHSYMEVVD RSSAKKGEVR VVIELNFRAE FEMARASAEY
201: NLLVSRLPEV FVGKSERLKA LIKILCHAAK KCMKEKKMHM GPWRKHKYMQ AKWFGTCERT APAPMSPVDF PGRLPRQRVS MLTFDLLENL PAAGLNFKAV
301: EVV
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.