Factsheet for VIT_13s0019g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70457	Soybean	cytosol	67.65	59.74
KRH01670	Soybean	nucleus	67.28	59.42
AT2G39650.1	Thale cress	cytosol	58.09	54.3
CDY24955	Canola	cytosol	59.19	53.31
Bra000140.1-P	Field mustard	cytosol	58.82	52.98
CDY07644	Canola	cytosol	58.46	52.82
GSMUA_Achr10P...	Banana	mitochondrion	64.34	50.29
Os01t0973600-01	Rice	plastid	59.19	47.77
Solyc06g005480.2.1	Tomato	cytosol	52.94	46.15
PGSC0003DMT400025041	Potato	cytosol	52.21	45.51
Zm00001d041955_P001	Maize	plastid	56.99	45.06
TraesCS3A01G530700.1	Wheat	plastid	55.51	43.77
TraesCS3D01G536200.1	Wheat	plastid	55.51	43.64
TraesCS3B01G600900.1	Wheat	plastid	55.88	43.55
HORVU3Hr1G115940.1	Barley	plastid	56.62	36.41
GSMUA_Achr5P07100_001	Banana	cytosol	62.5	32.88
VIT_04s0044g00970.t01	Wine grape	cytosol	25.37	25.46
VIT_18s0001g15610.t01	Wine grape	cytosol	22.79	22.46
VIT_00s0337g00040.t01	Wine grape	cytosol	23.16	22.34
VIT_05s0020g04500.t01	Wine grape	nucleus	30.15	21.24
VIT_18s0001g06070.t01	Wine grape	nucleus	20.59	20.9
VIT_12s0059g01640.t01	Wine grape	nucleus	22.43	20.27
VIT_00s0265g00090.t01	Wine grape	mitochondrion	22.79	20.06
VIT_00s0179g00360.t01	Wine grape	cytosol	29.04	19.9
VIT_12s0028g03560.t01	Wine grape	cytosol	20.59	18.48

Protein Annotations

EntrezGene:100251328	wikigene:100251328	MapMan:35.2	ProteinID:CBI31683	ProteinID:CBI31683.3	UniProt:D7TLU6
EMBL:FN595998	EntrezGene:LOC100251328	wikigene:LOC100251328	InterPro:PDDEXK-like	PFAM:PF04720	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	TIGRFAMs:TIGR01615	UniParc:UPI0001BE3E88	ArrayExpress:VIT_13s0019g01100	EnsemblPlantsGene:VIT_13s0019g01100	EnsemblPlants:VIT_13s0019g01100.t01
unigene:Vvi.3433	RefSeq:XP_002283687	RefSeq:XP_002283687.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:2798650..2801653

Molecular Weight (calculated)

30997.8 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.422

Length

272 amino acids

Sequence
(BLAST)

001: MMVSDFLENG SVGAESCCSS DSDSGFSDLA FLPEKISFYK HSMDRYESDL LSMVHSFMLS INETDLHFVN SGPCNTSCIR FCLVKRLRLS GYDAAVCSSR
101: WQGCGKVPGG DHEYIDVVNY KDNGSTERLI IDIDFRSHFE IARAVESYDR ILSSLPVIYV GSLTKLKQFL QVMVEAARSS LKQNSMPLPP WRSLDYLEAK
201: WQSSYQRQFN PDGESIKNGI SSDHKQCSEH LKRLQHALQL EVEAERLLKP INSDNNWRLK PGRRRHSSLR IL

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.