Factsheet for GSMUA_Achr10P02460_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g01100.t01	Wine grape	nucleus	50.29	64.34
Os01t0973600-01	Rice	plastid	58.62	60.53
KRH01670	Soybean	nucleus	51.15	57.79
KRH70457	Soybean	cytosol	50.57	57.14
Zm00001d041955_P001	Maize	plastid	54.31	54.94
AT2G39650.1	Thale cress	cytosol	45.4	54.3
TraesCS3A01G530700.1	Wheat	plastid	52.87	53.33
TraesCS3B01G600900.1	Wheat	plastid	53.45	53.3
TraesCS3D01G536200.1	Wheat	plastid	52.87	53.18
Bra000140.1-P	Field mustard	cytosol	45.4	52.32
CDY24955	Canola	cytosol	45.4	52.32
CDY07644	Canola	cytosol	45.11	52.16
GSMUA_Achr5P07100_001	Banana	cytosol	75.86	51.06
PGSC0003DMT400025041	Potato	cytosol	43.39	48.4
Solyc06g005480.2.1	Tomato	cytosol	42.82	47.76
HORVU3Hr1G115940.1	Barley	plastid	53.74	44.21
GSMUA_Achr4P14880_001	Banana	mitochondrion	20.69	27.27
GSMUA_Achr7P03040_001	Banana	nucleus	19.54	26.25
GSMUA_Achr3P15230_001	Banana	cytosol	25.0	25.82
GSMUA_Achr8P26930_001	Banana	cytosol	24.71	24.36
GSMUA_Achr8P20590_001	Banana	plastid	25.0	23.97
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	24.43	23.68
GSMUA_Achr8P04470_001	Banana	cytosol	24.43	23.1
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	25.29	23.04
GSMUA_Achr6P21070_001	Banana	cytosol	18.97	22.15
GSMUA_Achr4P02600_001	Banana	nucleus	17.53	21.94
GSMUA_Achr7P24960_001	Banana	cytosol	17.24	21.9
GSMUA_Achr9P25590_001	Banana	plastid	25.29	21.62
GSMUA_Achr3P31780_001	Banana	cytosol	17.82	21.6
GSMUA_Achr3P03980_001	Banana	cytosol	16.09	19.51
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	9.48	15.87

Protein Annotations

EnsemblPlants:GSMUA_Achr10P02460_001	EnsemblPlants:GSMUA_Achr10T02460_001	EnsemblPlantsGene:GSMUA_Achr10G02460_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002965347	UniProt:M0RES3	MapMan:35.2

Description

plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G02460_001]

Coordinates

chr10:+:7219973..7223180

Molecular Weight (calculated)

38802.3 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.357

Length

348 amino acids

Sequence
(BLAST)

001: MLLAREFGVR RVGEAPSPPV ATRRRSARLG PWVLDPRPAS GSPRGRNGGG EGDFRICSAA KDFMGQIGGF SHESEHDLAL MVTDFLENGS GSAESRYSSD
101: SDSGFSDLAH LAENVMFVKR GMTQSESGLQ SVVHSLLFSI NEVDLYLVKE EQCNASCIRQ SLVKLLKLSG YDAAICSSRW QGFDKVPGGD HEYIDVVLGE
201: AEGSERLIID IDFRSHFEIA RAVDSYDAVL SSLPVVYVGS LSRLKQFLQV MVDAAKFSLK QNSMPLPPWR SLAYLQAKWY SKYEREHNVH TRNKHIVGSD
301: HRQCIGHLQR LKASLKLEIE SERLLKPITN DKKRMAKSDR QRLSLLGC

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.