Factsheet for GSMUA_Achr4P14880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT3G22970.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P15230_001	Banana	cytosol	62.12	48.66
GSMUA_Achr8P26930_001	Banana	cytosol	64.02	47.88
GSMUA_Achr8P04470_001	Banana	cytosol	64.39	46.2
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	57.2	42.06
GSMUA_Achr8P20590_001	Banana	plastid	56.06	40.77
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	56.06	38.74
CDY18366	Canola	cytosol	43.94	38.67
CDX93300	Canola	cytosol	43.94	38.67
CDY07696	Canola	cytosol	45.45	38.46
Bra017099.1-P	Field mustard	cytosol	43.56	38.33
Bra000098.1-P	Field mustard	cytosol	44.7	38.19
CDY14428	Canola	cytosol	44.7	37.94
AT2G38820.2	Thale cress	cytosol	43.94	37.42
CDY29750	Canola	nucleus, plastid	49.24	36.72
Bra036877.1-P	Field mustard	cytosol, plastid	48.86	36.44
AT4G14620.1	Thale cress	cytosol	46.59	36.07
CDX92970	Canola	cytosol	45.45	36.04
Bra001897.1-P	Field mustard	cytosol	45.45	36.04
CDY16266	Canola	nucleus	48.48	35.85
GSMUA_Achr9P25590_001	Banana	plastid	54.55	35.38
KRH71351	Soybean	cytosol	47.73	35.1
PGSC0003DMT400041951	Potato	cytosol	48.48	34.59
KRG95606	Soybean	cytosol	46.97	34.35
AT3G54550.1	Thale cress	plastid	37.12	34.03
CDX94877	Canola	cytosol	44.7	34.01
KRH32089	Soybean	cytosol	43.56	33.92
VIT_00s0179g00360.t01	Wine grape	cytosol	50.38	33.5
Bra033896.1-P	Field mustard	cytosol	46.21	33.24
KRG92439	Soybean	plastid	49.24	33.08
VIT_05s0020g04500.t01	Wine grape	nucleus	48.11	32.9
KRH34359	Soybean	plastid	48.11	32.82
KRH69065	Soybean	cytosol	45.08	32.51
CDY10330	Canola	cytosol	44.7	32.24
AT3G22970.1	Thale cress	plastid	44.7	31.89
Solyc06g053910.2.1	Tomato	cytosol, plastid	46.97	31.88
PGSC0003DMT400015576	Potato	cytosol, plastid	47.73	31.82
KRH31637	Soybean	cytosol	45.45	31.33
CDY10329	Canola	plastid	44.7	31.22
Solyc09g082980.2.1	Tomato	nucleus	46.97	31.16
GSMUA_Achr7P03040_001	Banana	nucleus	26.14	26.64
PGSC0003DMT400049773	Potato	nucleus	43.56	26.5
Solyc09g065760.2.1	Tomato	cytosol, plastid	43.56	26.44
GSMUA_Achr6P21070_001	Banana	cytosol	28.41	25.17
GSMUA_Achr7P24960_001	Banana	cytosol	23.86	22.99
GSMUA_Achr3P03980_001	Banana	cytosol	24.62	22.65
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	17.42	22.12
GSMUA_Achr3P31780_001	Banana	cytosol	23.86	21.95
GSMUA_Achr4P02600_001	Banana	nucleus	23.11	21.94
GSMUA_Achr10P...	Banana	mitochondrion	27.27	20.69
GSMUA_Achr5P07100_001	Banana	cytosol	26.89	13.73

Protein Annotations

EnsemblPlants:GSMUA_Achr4P14880_001	EnsemblPlants:GSMUA_Achr4T14880_001	EnsemblPlantsGene:GSMUA_Achr4G14880_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002951753	UniProt:M0SP03	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G14880_001]

Coordinates

chr4:+:11208966..11209938

Molecular Weight (calculated)

29520.1 Da

IEP (calculated)

9.635

GRAVY (calculated)

-0.595

Length

264 amino acids

Sequence
(BLAST)

001: MVRSDQAKPA GKSMLKRLFE RQFASAPRIS PEERLDSWAD LEPSSVSLDR MIRNYMEGES NNTRNPPDDD LAAEPTIASA DARDAAEAGL VLCTSQTEIK
101: LLADASNLME KSRNCKRKEE YIKAVTAGLR SLGYDASICK SRWKKTSSVA AGEYQYIDVI VGGGERLLVD VDFRSEFEIA RSTKRYREVL QSLPSVFVGE
201: EDRVNQIVAV VSQAARKSLK KKGLHVPPWR RPEYMRAKWL STYSRLTPSK PKRQAIGSGE SVEG

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.