Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr3P24940_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22970.1 | GSMUA_Achr10P... | AT4G15560.1 | 24104567 |
| AT3G22970.1 | GSMUA_Achr3P24940_001 | AT4G15560.1 | 24104567 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P26930_001 | Banana | cytosol | 81.01 | 77.34 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 79.53 | 72.83 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 48.66 | 62.12 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 59.94 | 56.27 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 56.68 | 52.62 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 56.97 | 50.26 |
| Bra001897.1-P | Field mustard | cytosol | 49.55 | 50.15 |
| CDX92970 | Canola | cytosol | 49.55 | 50.15 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 56.68 | 49.48 |
| Bra017099.1-P | Field mustard | cytosol | 43.92 | 49.33 |
| CDX93300 | Canola | cytosol | 43.62 | 49.0 |
| CDY18366 | Canola | cytosol | 43.62 | 49.0 |
| KRH71351 | Soybean | cytosol | 51.04 | 47.91 |
| Bra000098.1-P | Field mustard | cytosol | 43.92 | 47.9 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 56.38 | 47.86 |
| CDY07696 | Canola | cytosol | 44.21 | 47.76 |
| AT2G38820.2 | Thale cress | cytosol | 43.92 | 47.74 |
| CDX94877 | Canola | cytosol | 48.96 | 47.55 |
| CDY14428 | Canola | cytosol | 43.62 | 47.27 |
| KRH32089 | Soybean | cytosol | 47.18 | 46.9 |
| CDY29750 | Canola | nucleus, plastid | 49.26 | 46.89 |
| PGSC0003DMT400041951 | Potato | cytosol | 51.34 | 46.76 |
| Bra036877.1-P | Field mustard | cytosol, plastid | 48.96 | 46.61 |
| Bra033896.1-P | Field mustard | cytosol | 50.74 | 46.59 |
| KRH34359 | Soybean | plastid | 53.41 | 46.51 |
| KRG92439 | Soybean | plastid | 53.12 | 45.55 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 53.41 | 45.45 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 54.9 | 45.45 |
| AT3G22970.1 | Thale cress | plastid | 49.85 | 45.41 |
| CDY16266 | Canola | nucleus | 48.07 | 45.38 |
| AT4G14620.1 | Thale cress | cytosol | 45.4 | 44.87 |
| CDY10330 | Canola | cytosol | 48.66 | 44.81 |
| AT3G54550.1 | Thale cress | plastid | 38.28 | 44.79 |
| Solyc09g082980.2.1 | Tomato | nucleus | 52.82 | 44.72 |
| KRG95606 | Soybean | cytosol | 47.77 | 44.6 |
| Solyc06g053910.2.1 | Tomato | cytosol, plastid | 50.74 | 43.96 |
| KRH69065 | Soybean | cytosol | 46.59 | 42.9 |
| KRH31637 | Soybean | cytosol | 48.37 | 42.56 |
| CDY10329 | Canola | plastid | 46.88 | 41.8 |
| Solyc09g065760.2.1 | Tomato | cytosol, plastid | 49.55 | 38.39 |
| PGSC0003DMT400049773 | Potato | nucleus | 49.26 | 38.25 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 26.41 | 29.87 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 21.36 | 27.8 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 21.66 | 26.64 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 16.32 | 26.44 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 21.96 | 25.78 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 21.07 | 25.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.82 | 25.0 |
| GSMUA_Achr3P03980_001 | Banana | cytosol | 21.07 | 24.74 |
| GSMUA_Achr5P07100_001 | Banana | cytosol | 25.82 | 16.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P15230_001 | EnsemblPlants:GSMUA_Achr3T15230_001 | EnsemblPlantsGene:GSMUA_Achr3G15230_001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF19 |
| PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000296C8D5 | UniProt:M0SET9 | MapMan:35.2 |
Description
Whole genome shotgun sequence of line PN40024, scaffold_179.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G15230_001]
Coordinates
chr3:+:15777883..15779161
Molecular Weight (calculated)
37078.5 Da
IEP (calculated)
7.383
GRAVY (calculated)
-0.274
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFPMKIQPI DAIDVLLSDQ VKPVPKWRLK RLFERQFPGV LRISSAERLA GGVDLEPSSV CLDKMVRNFI EDSGEKPSSR CGRSRCNCFH GNCDDSSDDD
101: LEFLPSSNAG DPPVVSAAEV IKGLVVCATL AERNLLADAS SVVEKCKNCN QKDEHMKAIA DGLRSLGYDA AICKSRWEKT PSFPAGEHEY IDVIVGLERL
201: LVDVDFRSEF EIARSTKSYA ALLQSLPSVF VGKVDRVDQI VAVVSEAARH SLKKKGLHFP PWRKPEYLRS KWLAPYERSI LPADPMRAAQ ESREAEGKGA
301: EVVVAAPAWE LPEVKPKASH KGAKVVTGLA SVLSEKP
101: LEFLPSSNAG DPPVVSAAEV IKGLVVCATL AERNLLADAS SVVEKCKNCN QKDEHMKAIA DGLRSLGYDA AICKSRWEKT PSFPAGEHEY IDVIVGLERL
201: LVDVDFRSEF EIARSTKSYA ALLQSLPSVF VGKVDRVDQI VAVVSEAARH SLKKKGLHFP PWRKPEYLRS KWLAPYERSI LPADPMRAAQ ESREAEGKGA
301: EVVVAAPAWE LPEVKPKASH KGAKVVTGLA SVLSEKP
001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
Arabidopsis Description
At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.