Factsheet for GSMUA_Achr8P20590_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT3G22970.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	79.34	75.39
GSMUA_Achr9P25590_001	Banana	plastid	74.1	66.09
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	65.01	65.74
GSMUA_Achr3P15230_001	Banana	cytosol	52.62	56.68
GSMUA_Achr4P14880_001	Banana	mitochondrion	40.77	56.06
GSMUA_Achr8P26930_001	Banana	cytosol	52.34	53.82
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	42.98	52.0
EER95459	Sorghum	plastid	42.7	51.84
EER91615	Sorghum	mitochondrion	41.6	51.54
Os03t0162500-01	Rice	plastid	43.53	51.47
Zm00001d027763_P001	Maize	plastid	42.42	51.33
Os10t0417800-01	Rice	plastid	42.15	50.83
GSMUA_Achr8P04470_001	Banana	cytosol	51.52	50.82
TraesCS5B01G442200.1	Wheat	plastid	52.34	50.67
TraesCS5A01G439200.1	Wheat	plastid	51.79	50.13
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	42.7	49.84
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	42.7	49.84
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	42.7	49.21
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	42.7	49.21
KRH71351	Soybean	cytosol	48.48	49.03
KRH32089	Soybean	cytosol	45.45	48.67
CDY18366	Canola	cytosol	40.22	48.67
TraesCS5D01G446400.1	Wheat	plastid	50.96	48.56
Bra017099.1-P	Field mustard	cytosol	39.94	48.33
CDX93300	Canola	cytosol	39.94	48.33
Bra001897.1-P	Field mustard	cytosol	43.8	47.75
CDX92970	Canola	cytosol	43.8	47.75
AT2G38820.2	Thale cress	cytosol	40.77	47.74
PGSC0003DMT400041951	Potato	cytosol	48.48	47.57
VIT_05s0020g04500.t01	Wine grape	nucleus	50.14	47.15
PGSC0003DMT400015576	Potato	cytosol, plastid	51.24	46.97
Bra000098.1-P	Field mustard	cytosol	39.67	46.6
KRG92439	Soybean	plastid	50.41	46.56
KRH34359	Soybean	plastid	49.59	46.51
CDY29750	Canola	nucleus, plastid	45.18	46.33
CDY14428	Canola	cytosol	39.67	46.3
CDY07696	Canola	cytosol	39.67	46.15
Bra036877.1-P	Field mustard	cytosol, plastid	44.9	46.05
KRG95606	Soybean	cytosol	45.73	45.98
Solyc09g082980.2.1	Tomato	nucleus	50.14	45.73
Os03t0796600-01	Rice	cytosol, nucleus, plastid	50.96	45.68
CDY16266	Canola	nucleus	44.9	45.66
VIT_00s0179g00360.t01	Wine grape	cytosol	49.04	44.84
HORVU5Hr1G105950.2	Barley	plastid	49.86	44.47
AT3G54550.1	Thale cress	plastid	35.26	44.44
CDX94877	Canola	cytosol	42.42	44.38
EER93295	Sorghum	plastid	47.93	44.27
Bra033896.1-P	Field mustard	cytosol	44.63	44.14
Zm00001d018962_P001	Maize	mitochondrion, plastid	46.28	43.86
AT3G22970.1	Thale cress	plastid	44.63	43.78
Solyc06g053910.2.1	Tomato	cytosol, plastid	46.83	43.7
CDY10330	Canola	cytosol	43.8	43.44
AT4G14620.1	Thale cress	cytosol	40.77	43.4
Zm00001d034444_P002	Maize	plastid	47.93	42.96
Zm00001d007820_P002	Maize	plastid	45.45	41.15
KRH69065	Soybean	cytosol	41.05	40.71
CDY10329	Canola	plastid	42.15	40.48
KRH31637	Soybean	cytosol	42.7	40.47
Solyc09g065760.2.1	Tomato	cytosol, plastid	44.63	37.24
PGSC0003DMT400049773	Potato	nucleus	44.35	37.1
EER98072	Sorghum	cytosol, plastid	44.08	33.76
GSMUA_Achr6P21070_001	Banana	cytosol	25.34	30.87
GSMUA_Achr7P03040_001	Banana	nucleus	20.11	28.19
GSMUA_Achr7P24960_001	Banana	cytosol	20.39	27.01
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	14.88	25.96
GSMUA_Achr3P03980_001	Banana	cytosol	20.39	25.78
GSMUA_Achr4P02600_001	Banana	nucleus	19.28	25.18
GSMUA_Achr10P...	Banana	mitochondrion	23.97	25.0
GSMUA_Achr3P31780_001	Banana	cytosol	19.28	24.39
GSMUA_Achr5P07100_001	Banana	cytosol	24.52	17.21

Protein Annotations

EnsemblPlants:GSMUA_Achr8P20590_001	EnsemblPlants:GSMUA_Achr8T20590_001	EnsemblPlantsGene:GSMUA_Achr8G20590_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000294AAF3	UniProt:M0TS62	MapMan:35.2

Description

Putative plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G20590_001]

Coordinates

chr8:+:25728482..25729745

Molecular Weight (calculated)

40008.4 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.469

Length

363 amino acids

Sequence
(BLAST)

001: MPFQMKIQPV HASGAMAFLP RSDPVKPVAK SRLKRLIERQ FPSVLRSSSA EKTAGFGERR EKEREDGGDI EPSSVCLDRM VIGFIEGGYH EKQPRGRCNC
101: FNANFDDSSD DDFDARDSDA PGCAAAPSDV AEAIKSLVLC ASVVERNLLA DASKILEKAK NSKNKGECRR MVSDGLRSLG YDAAICKSRW DKDPSFPAGE
201: YEYIDVVMDG GDRFLVDVDY RSEFEVARPT KSFRAVLQHL PQVFVGRSDR LQQIVAFASE AARQSLKKKG LHVPPWRRPE YMKAKWLSPY QRTADREAKE
301: ESASGGEVIP CLISSVYFSG VSEDCGAGEV ADDRTKGVVS PWRPPPARPQ AGVKVVTGLA LVL

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.