Factsheet for Zm00001d007820_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Zm00001d038170_P001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018962_P001	Maize	mitochondrion, plastid	78.8	82.51
EER98072	Sorghum	cytosol, plastid	76.56	64.77
Zm00001d034444_P002	Maize	plastid	59.35	58.77
Zm00001d027763_P001	Maize	plastid	37.91	50.67
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	37.41	50.0
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	42.39	47.35
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	44.14	46.34
GSMUA_Achr8P20590_001	Banana	plastid	41.15	45.45
GSMUA_Achr9P25590_001	Banana	plastid	42.14	41.52
Bra036877.1-P	Field mustard	cytosol, plastid	36.16	40.96
CDY29750	Canola	nucleus, plastid	35.91	40.68
CDY16266	Canola	nucleus	35.41	39.78
VIT_05s0020g04500.t01	Wine grape	nucleus	38.15	39.64
PGSC0003DMT400041951	Potato	cytosol	35.41	38.38
KRH34359	Soybean	plastid	36.66	37.98
KRH69065	Soybean	cytosol	34.66	37.98
CDX92970	Canola	cytosol	31.42	37.84
Bra001897.1-P	Field mustard	cytosol	31.42	37.84
KRH32089	Soybean	cytosol	31.92	37.76
AT4G14620.1	Thale cress	cytosol	31.92	37.54
KRG92439	Soybean	plastid	36.66	37.4
KRH71351	Soybean	cytosol	33.17	37.05
PGSC0003DMT400015576	Potato	cytosol, plastid	36.41	36.87
KRH31637	Soybean	cytosol	35.16	36.81
AT2G38820.2	Thale cress	cytosol	28.43	36.77
CDY18366	Canola	cytosol	27.43	36.67
Bra017099.1-P	Field mustard	cytosol	27.43	36.67
KRG95606	Soybean	cytosol	32.92	36.57
Solyc09g082980.2.1	Tomato	nucleus	35.91	36.18
VIT_00s0179g00360.t01	Wine grape	cytosol	35.66	36.02
CDX93300	Canola	cytosol	26.93	36.0
Bra033896.1-P	Field mustard	cytosol	32.92	35.97
CDX94877	Canola	cytosol	30.92	35.73
AT3G54550.1	Thale cress	plastid	25.44	35.42
AT3G22970.1	Thale cress	plastid	32.67	35.41
CDY10330	Canola	cytosol	32.17	35.25
Solyc06g053910.2.1	Tomato	cytosol, plastid	34.16	35.22
CDY07696	Canola	cytosol	26.43	33.97
Zm00001d042376_P001	Maize	cytosol	24.69	33.67
Bra000098.1-P	Field mustard	cytosol	25.94	33.66
CDY14428	Canola	cytosol	25.94	33.44
Zm00001d012069_P001	Maize	mitochondrion	23.19	32.29
CDY10329	Canola	plastid	30.42	32.28
Zm00001d043444_P001	Maize	nucleus	22.19	31.34
PGSC0003DMT400049773	Potato	nucleus	33.17	30.65
Solyc09g065760.2.1	Tomato	cytosol, plastid	32.67	30.11
Zm00001d042631_P001	Maize	cytosol	15.71	29.58
Zm00001d051691_P001	Maize	cytosol	21.2	27.07
Zm00001d041955_P001	Maize	plastid	19.45	22.67

Protein Annotations

EnsemblPlants:Zm00001d007820_P002	EnsemblPlants:Zm00001d007820_T002	EnsemblPlantsGene:Zm00001d007820	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	ProteinID:ONM27672.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000221866D	UniProt:A0A1D6F944
MapMan:35.2	:	:	:	:	:

Description

Plant-specific domain TIGR01615 family protein

Coordinates

chr2:+:240282217..240284226

Molecular Weight (calculated)

42553.2 Da

IEP (calculated)

9.014

GRAVY (calculated)

-0.439

Length

401 amino acids

Sequence
(BLAST)

001: MTFLFPAKNQ QGTMEGRPSA PARVSMFRRL MVRVTPAERL AGDGKERDKD ERPPASGAGA DAEVGSVGLD KMVLSFMEDS SAAAERPPRG RCSSCFNGNN
101: QDGSDDEDFD FLPSASAPAA APAAAGDALE LLKGLVQCAS TPERNLLADA SRIAERCGSG SGSGRKKADV RRAVADGLRA LGYDAAVCTS RWDRTPSHPA
201: GEHQYIDANV EPGAGAAARV RVRVVVEVDF RSEFEVARPT KAYRAALQAL PPLFVGSPER LGRVVGVVAD AARQSLRKRG LHFPPWRKRE YMRAKWLSPH
301: ARSSSSADRT PAPATPVSAA AAAFSGEFEL WFDEKEKPKA ADYDGGIPGG EDDGAGKKVT VMVSPTPTPW RAEEPGAASK LCPQAKRKVV TGLASLLPLA
401: S

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.