Factsheet for Zm00001d034444_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Zm00001d038170_P001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93295	Sorghum	plastid	86.67	89.31
TraesCS5B01G442200.1	Wheat	plastid	69.63	75.2
TraesCS5D01G446400.1	Wheat	plastid	70.37	74.8
TraesCS5A01G439200.1	Wheat	plastid	69.14	74.67
Os03t0796600-01	Rice	cytosol, nucleus, plastid	74.57	74.57
HORVU5Hr1G105950.2	Barley	plastid	69.14	68.8
Zm00001d018962_P001	Maize	mitochondrion, plastid	58.77	62.14
Zm00001d007820_P002	Maize	plastid	58.77	59.35
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	43.95	49.58
GSMUA_Achr8P20590_001	Banana	plastid	42.96	47.93
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	44.44	47.12
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.81	47.0
Zm00001d027763_P001	Maize	plastid	34.57	46.67
GSMUA_Achr9P25590_001	Banana	plastid	42.72	42.51
VIT_05s0020g04500.t01	Wine grape	nucleus	40.49	42.49
CDX92970	Canola	cytosol	34.32	41.74
Bra001897.1-P	Field mustard	cytosol	34.32	41.74
KRH34359	Soybean	plastid	39.26	41.09
PGSC0003DMT400041951	Potato	cytosol	37.04	40.54
CDY29750	Canola	nucleus, plastid	35.31	40.4
CDY16266	Canola	nucleus	35.56	40.34
AT2G38820.2	Thale cress	cytosol	30.86	40.32
KRG92439	Soybean	plastid	39.01	40.2
Bra036877.1-P	Field mustard	cytosol, plastid	35.06	40.11
CDX94877	Canola	cytosol	33.83	39.48
PGSC0003DMT400015576	Potato	cytosol, plastid	38.52	39.39
KRH69065	Soybean	cytosol	35.56	39.34
AT4G14620.1	Thale cress	cytosol	33.09	39.3
Solyc09g082980.2.1	Tomato	nucleus	38.52	39.2
KRH71351	Soybean	cytosol	34.57	39.0
KRH32089	Soybean	cytosol	32.35	38.64
KRG95606	Soybean	cytosol	34.07	38.23
KRH31637	Soybean	cytosol	36.05	38.12
Bra033896.1-P	Field mustard	cytosol	34.32	37.87
AT3G22970.1	Thale cress	plastid	34.57	37.84
VIT_00s0179g00360.t01	Wine grape	cytosol	37.04	37.78
CDY10330	Canola	cytosol	34.07	37.7
CDY18366	Canola	cytosol	27.9	37.67
Bra017099.1-P	Field mustard	cytosol	27.65	37.33
Solyc06g053910.2.1	Tomato	cytosol, plastid	35.8	37.28
Bra000098.1-P	Field mustard	cytosol	28.4	37.22
CDY07696	Canola	cytosol	28.64	37.18
CDX93300	Canola	cytosol	27.41	37.0
CDY14428	Canola	cytosol	28.4	36.98
CDY10329	Canola	plastid	32.35	34.66
AT3G54550.1	Thale cress	plastid	23.95	33.68
PGSC0003DMT400049773	Potato	nucleus	34.57	32.26
Solyc09g065760.2.1	Tomato	cytosol, plastid	34.57	32.18
Zm00001d043444_P001	Maize	nucleus	22.22	31.69
Zm00001d042376_P001	Maize	cytosol	22.22	30.61
Zm00001d042631_P001	Maize	cytosol	15.56	29.58
Zm00001d012069_P001	Maize	mitochondrion	20.49	28.82
Zm00001d051691_P001	Maize	cytosol	19.26	24.84
Zm00001d041955_P001	Maize	plastid	20.49	24.13

Protein Annotations

EnsemblPlants:Zm00001d034444_P002	EnsemblPlants:Zm00001d034444_T002	EnsemblPlantsGene:Zm00001d034444	EntrezGene:103644178	InterPro:PDDEXK-like	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	PFAM:PF04720	ProteinID:ONM10266.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002215EBF
UniProt:A0A1D6L7P0	MapMan:35.2	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024 scaffold_179.assembly12x (Fragment)

Coordinates

chr1:+:293191447..293193641

Molecular Weight (calculated)

42952.0 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.408

Length

405 amino acids

Sequence
(BLAST)

001: MRSMPFQLKT GHHHHGAAME GKPPPPPTTQ QPAPTPRVSR LRRLLGRVSS SEKFAADGKD RDKDEKLPPP PPPLPPATDD ADAAGSLGLD RMVLSFMEEA
101: SAVERPPRGR CNCFNGSNHE ESDEEFDFLP SAHASATAAA GAGDALEALK GLVQSASVAE RNLLADASRL ADKCGKGCKG KAECRRAVAD GLRSLGYDAS
201: VCTSRWEKAP SHPAGEHEYI DAVVGKGKEQ EEEEVRLIVE VDFRSQFELA RSTKAYRAAL QALPPLFVGT PDRLGQIVAV VAEAARQSLK KKGLHFPPWR
301: KPEYMRAKWL SPHVRCGGVG GDMVAVPAAA AAAATPVQAA SFSGEFELVF DRKRSSAGAG AAAEGGAVGG EKITVVVSPW RPTEEASKKQ LPPKAKVVTG
401: LAAVL

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.