Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04096 | Sorghum | cytosol | 88.1 | 87.5 |
| Zm00001d012069_P001 | Maize | mitochondrion | 83.67 | 85.42 |
| Os01t0915000-01 | Rice | cytosol | 80.61 | 80.89 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 75.85 | 76.9 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 74.15 | 75.69 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 74.15 | 74.66 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 37.07 | 52.4 |
| HORVU3Hr1G093260.1 | Barley | plastid | 70.07 | 50.86 |
| Bra040373.1-P | Field mustard | plastid | 23.81 | 36.46 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 32.65 | 34.04 |
| CDY35924 | Canola | nucleus | 34.01 | 33.33 |
| AT3G07350.1 | Thale cress | nucleus | 33.67 | 33.22 |
| Solyc06g007580.1.1 | Tomato | nucleus | 33.33 | 32.78 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 32.99 | 32.33 |
| Bra029641.1-P | Field mustard | nucleus | 32.99 | 32.33 |
| CDY60822 | Canola | nucleus | 32.65 | 32.11 |
| PGSC0003DMT400053173 | Potato | nucleus | 32.31 | 31.77 |
| CDY34904 | Canola | nucleus | 32.31 | 31.46 |
| AT3G25240.1 | Thale cress | cytosol | 29.93 | 31.32 |
| KRH46613 | Soybean | mitochondrion, nucleus | 30.27 | 31.23 |
| Bra013223.1-P | Field mustard | nucleus | 28.91 | 30.14 |
| Zm00001d027763_P001 | Maize | plastid | 30.61 | 30.0 |
| CDY52283 | Canola | nucleus | 28.23 | 29.43 |
| KRH07392 | Soybean | nucleus | 29.93 | 29.43 |
| Solyc06g083160.1.1 | Tomato | nucleus | 28.91 | 29.01 |
| Zm00001d032955_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 29.25 | 28.67 |
| CDY15101 | Canola | nucleus | 26.87 | 28.42 |
| PGSC0003DMT400051812 | Potato | nucleus | 28.57 | 28.28 |
| Zm00001d042631_P001 | Maize | cytosol | 20.41 | 28.17 |
| PGSC0003DMT400008686 | Potato | cytosol | 24.83 | 26.64 |
| Zm00001d018962_P001 | Maize | mitochondrion, plastid | 34.69 | 26.63 |
| Zm00001d051691_P001 | Maize | cytosol | 27.89 | 26.11 |
| Zm00001d043444_P001 | Maize | nucleus | 24.83 | 25.7 |
| Zm00001d007820_P002 | Maize | plastid | 33.67 | 24.69 |
| Zm00001d034444_P002 | Maize | plastid | 30.61 | 22.22 |
| Zm00001d041955_P001 | Maize | plastid | 24.49 | 20.93 |
| Solyc09g057760.2.1 | Tomato | nucleus | 15.31 | 20.83 |
Protein Annotations
| EnsemblPlants:Zm00001d042376_P001 | EnsemblPlants:Zm00001d042376_T001 | EnsemblPlantsGene:Zm00001d042376 | EntrezGene:103650854 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF9 | PFAM:PF04720 | ProteinID:ONM35195.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000221C4EB |
| UniProt:A0A1D6N3C7 | MapMan:35.2 | : | : | : | : |
Description
DUF506 family protein
Coordinates
chr3:+:163753014..163753898
Molecular Weight (calculated)
30187.8 Da
IEP (calculated)
8.954
GRAVY (calculated)
-0.016
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYIRLDDA VRARLRGDAA AGCTSSGSDH DASACLSGLV QAFLETGASA AEAGGPGPAP KECDSDEEDG PGRAAAAVAS VRALLDPPAE EDVFRIRLAA
101: AVAAAAEAEA ALRAHGAAFR RAVAWRLRGA GYDAGVCRSR WEASGGITAG AYEYVDVVAP APVGPGARQR ARYIVDADFR AGLEVARATP EYAAVVAAVP
201: APAVVAREEA VGHAVRVASD AARRSLRAHG LHVPPWRKTR YMLAKWLGPY KRSTATSPAA VGAMPMPGGA GLDVKCRAVG FFAPPSTAPA PRIK
101: AVAAAAEAEA ALRAHGAAFR RAVAWRLRGA GYDAGVCRSR WEASGGITAG AYEYVDVVAP APVGPGARQR ARYIVDADFR AGLEVARATP EYAAVVAAVP
201: APAVVAREEA VGHAVRVASD AARRSLRAHG LHVPPWRKTR YMLAKWLGPY KRSTATSPAA VGAMPMPGGA GLDVKCRAVG FFAPPSTAPA PRIK
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.