Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0031g02330.t01 | |
| VIT_07s0130g00490.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | VIT_07s0031g02330.t01 | AT3G48150.1 | 21798944 |
| AT3G07350.1 | VIT_07s0130g00490.t01 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040373.1-P | Field mustard | plastid | 36.52 | 53.65 |
| Solyc06g007580.1.1 | Tomato | nucleus | 54.61 | 51.51 |
| PGSC0003DMT400053173 | Potato | nucleus | 53.9 | 50.84 |
| CDY15101 | Canola | nucleus | 47.87 | 48.56 |
| Solyc06g083160.1.1 | Tomato | nucleus | 50.35 | 48.46 |
| CDY52283 | Canola | nucleus | 48.23 | 48.23 |
| PGSC0003DMT400051812 | Potato | nucleus | 50.35 | 47.81 |
| AT3G25240.1 | Thale cress | cytosol | 47.16 | 47.33 |
| AT3G07350.1 | Thale cress | nucleus | 50.0 | 47.32 |
| CDY35924 | Canola | nucleus | 50.0 | 47.0 |
| Bra013223.1-P | Field mustard | nucleus | 46.81 | 46.81 |
| Bra029641.1-P | Field mustard | nucleus | 49.65 | 46.67 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 49.65 | 46.67 |
| CDY60822 | Canola | nucleus | 49.29 | 46.49 |
| CDY34904 | Canola | nucleus | 48.58 | 45.36 |
| KRH07392 | Soybean | nucleus | 46.81 | 44.15 |
| KRH46613 | Soybean | mitochondrion, nucleus | 44.33 | 43.86 |
| PGSC0003DMT400008686 | Potato | cytosol | 42.55 | 43.8 |
| Os01t0915000-01 | Rice | cytosol | 34.04 | 32.76 |
| Zm00001d042376_P001 | Maize | cytosol | 34.04 | 32.65 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 33.33 | 32.64 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 33.69 | 32.42 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 33.33 | 32.19 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 33.69 | 31.88 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 32.27 | 31.38 |
| Zm00001d012069_P001 | Maize | mitochondrion | 31.91 | 31.25 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 23.05 | 31.25 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 32.62 | 30.77 |
| EES04096 | Sorghum | cytosol | 32.27 | 30.74 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 31.21 | 29.43 |
| Os11t0437600-01 | Rice | plastid | 31.56 | 29.09 |
| VIT_12s0059g01640.t01 | Wine grape | nucleus | 30.85 | 28.9 |
| TraesCS4A01G116900.1 | Wheat | plastid | 32.98 | 28.53 |
| Solyc09g057760.2.1 | Tomato | nucleus | 21.63 | 28.24 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 26.6 | 24.75 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 24.11 | 24.64 |
| HORVU3Hr1G093260.1 | Barley | plastid | 34.75 | 24.2 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 25.89 | 23.62 |
| VIT_13s0019g01100.t01 | Wine grape | nucleus | 22.34 | 23.16 |
| VIT_18s0001g06070.t01 | Wine grape | nucleus | 21.63 | 22.76 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 29.08 | 21.24 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 29.43 | 20.91 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 19.15 | 19.93 |
Protein Annotations
| EntrezGene:100250319 | wikigene:100250319 | MapMan:35.2 | EMBL:AM430529 | ProteinID:CAN71484 | ProteinID:CAN71484.1 |
| ProteinID:CBI40915 | ProteinID:CBI40915.3 | UniProt:D7UDV0 | EMBL:FN596768 | EntrezGene:LOC100250319 | wikigene:LOC100250319 |
| InterPro:PDDEXK-like | PFAM:PF04720 | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | TIGRFAMs:TIGR01615 | UniParc:UPI0001986102 |
| ArrayExpress:VIT_00s0337g00040 | EnsemblPlantsGene:VIT_00s0337g00040 | EnsemblPlants:VIT_00s0337g00040.t01 | RefSeq:XP_002265575 | RefSeq:XP_002265575.1 | SEG:seg |
Description
No Description!
Coordinates
chrUn:-:24052573..24053597
Molecular Weight (calculated)
31262.1 Da
IEP (calculated)
9.255
GRAVY (calculated)
-0.424
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVFVRSKRV TDPLDDRVKA RIVGRGSVPV SSGSSSDAGE ESPCLSDLVY GFLEDCAEAQ PSEMELGSEN DDDDTSPFDP TEVVASLLYP KANVDRYRTL
101: LFSHVSKAVG SLSCPRSNKA AIRRNVAAVL RDLGHNAAVC RTKWDGSGGL TAGNHEFIDV LRSEKRYIVD LDFAGEFEIA RPTDQYKRLI QTLPRVFIGK
201: SEDLKKIVKL TCDAAKRSLK SRGLHLPPWR KNRYMQNKWF GPCRRTATPS PPLAPASTEF TVKCRSVGFD AVSDGRFFVR TR
101: LFSHVSKAVG SLSCPRSNKA AIRRNVAAVL RDLGHNAAVC RTKWDGSGGL TAGNHEFIDV LRSEKRYIVD LDFAGEFEIA RPTDQYKRLI QTLPRVFIGK
201: SEDLKKIVKL TCDAAKRSLK SRGLHLPPWR KNRYMQNKWF GPCRRTATPS PPLAPASTEF TVKCRSVGFD AVSDGRFFVR TR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.