Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G456400.1 | Wheat | cytosol | 96.92 | 98.26 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 95.89 | 96.55 |
| Os01t0915000-01 | Rice | cytosol | 77.4 | 77.13 |
| Zm00001d012069_P001 | Maize | mitochondrion | 73.97 | 75.0 |
| Zm00001d042376_P001 | Maize | cytosol | 74.66 | 74.15 |
| EES04096 | Sorghum | cytosol | 74.66 | 73.65 |
| HORVU3Hr1G093260.1 | Barley | plastid | 85.27 | 61.48 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 38.36 | 53.85 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 41.78 | 40.8 |
| Bra040373.1-P | Field mustard | plastid | 23.29 | 35.42 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 32.19 | 33.33 |
| AT3G07350.1 | Thale cress | nucleus | 33.56 | 32.89 |
| Solyc06g007580.1.1 | Tomato | nucleus | 32.88 | 32.11 |
| CDY35924 | Canola | nucleus | 32.88 | 32.0 |
| KRH46613 | Soybean | mitochondrion, nucleus | 31.16 | 31.93 |
| AT3G25240.1 | Thale cress | cytosol | 30.48 | 31.67 |
| Bra029641.1-P | Field mustard | nucleus | 32.19 | 31.33 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 32.19 | 31.33 |
| PGSC0003DMT400053173 | Potato | nucleus | 31.85 | 31.1 |
| CDY60822 | Canola | nucleus | 31.85 | 31.1 |
| CDY52283 | Canola | nucleus | 29.45 | 30.5 |
| Bra013223.1-P | Field mustard | nucleus | 29.11 | 30.14 |
| CDY34904 | Canola | nucleus | 31.16 | 30.13 |
| CDY15101 | Canola | nucleus | 28.42 | 29.86 |
| Solyc06g083160.1.1 | Tomato | nucleus | 29.79 | 29.69 |
| KRH07392 | Soybean | nucleus | 30.14 | 29.43 |
| PGSC0003DMT400051812 | Potato | nucleus | 28.77 | 28.28 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 29.45 | 27.65 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 27.05 | 27.24 |
| TraesCS6D01G263600.1 | Wheat | cytosol | 29.79 | 27.19 |
| PGSC0003DMT400008686 | Potato | cytosol | 23.97 | 25.55 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 21.23 | 25.2 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 22.6 | 23.83 |
| TraesCS5D01G446400.1 | Wheat | plastid | 30.82 | 23.62 |
| Solyc09g057760.2.1 | Tomato | nucleus | 17.12 | 23.15 |
| TraesCS3D01G536200.1 | Wheat | plastid | 23.97 | 20.23 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G416400.1 | EnsemblPlantsGene:TraesCS3D01G416400 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:527674460..527675709
Molecular Weight (calculated)
30212.6 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.127
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYIRLDDA VRARLRGDGG GGTSSGSDHD ASACLSDLVQ AFLETDAAGG NGDDAAGPAP KGRDGYDSDD ADGAAEAAAA SVRELLDPPA AEDPFRIRLA
101: AAVSAALDAE APLRGHGAAF RRAVMRRLRA AGYDAGVCRS RWETCGNLTA GTYEYIDVVV PAAGKAARYI VDADFRAGLE VARATAEYAV VVAAVPAKAV
201: VAREEAVGRA VRVAADAARR SLRAHGLHVP PWRKSRYMLA KWLGPYKRSP SSTSSTASGA MPAPGATGMD VIKCRAVGFF PSQTAAPAAR IK
101: AAVSAALDAE APLRGHGAAF RRAVMRRLRA AGYDAGVCRS RWETCGNLTA GTYEYIDVVV PAAGKAARYI VDADFRAGLE VARATAEYAV VVAAVPAKAV
201: VAREEAVGRA VRVAADAARR SLRAHGLHVP PWRKSRYMLA KWLGPYKRSP SSTSSTASGA MPAPGATGMD VIKCRAVGFF PSQTAAPAAR IK
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.