Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 93.98 | 93.98 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 88.96 | 90.78 |
| TraesCS4A01G116900.1 | Wheat | plastid | 95.65 | 87.73 |
| Os11t0437600-01 | Rice | plastid | 63.21 | 61.76 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 46.15 | 46.31 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 40.8 | 41.78 |
| Bra040373.1-P | Field mustard | plastid | 25.42 | 39.58 |
| CDY60822 | Canola | nucleus | 34.78 | 34.78 |
| Bra029641.1-P | Field mustard | nucleus | 34.45 | 34.33 |
| CDY34904 | Canola | nucleus | 34.45 | 34.11 |
| CDY35924 | Canola | nucleus | 34.11 | 34.0 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 33.11 | 33.0 |
| AT3G07350.1 | Thale cress | nucleus | 32.78 | 32.89 |
| Solyc06g007580.1.1 | Tomato | nucleus | 32.78 | 32.78 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 30.77 | 32.62 |
| PGSC0003DMT400053173 | Potato | nucleus | 32.11 | 32.11 |
| KRH07392 | Soybean | nucleus | 31.1 | 31.1 |
| AT3G25240.1 | Thale cress | cytosol | 29.1 | 30.96 |
| KRH46613 | Soybean | mitochondrion, nucleus | 29.1 | 30.53 |
| Solyc06g083160.1.1 | Tomato | nucleus | 29.43 | 30.03 |
| CDY52283 | Canola | nucleus | 27.76 | 29.43 |
| Bra013223.1-P | Field mustard | nucleus | 27.76 | 29.43 |
| PGSC0003DMT400051812 | Potato | nucleus | 29.1 | 29.29 |
| PGSC0003DMT400008686 | Potato | cytosol | 26.42 | 28.83 |
| CDY15101 | Canola | nucleus | 26.76 | 28.78 |
| TraesCS6D01G263600.1 | Wheat | cytosol | 28.76 | 26.88 |
| Solyc09g057760.2.1 | Tomato | nucleus | 19.4 | 26.85 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 27.76 | 26.69 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 21.07 | 25.61 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 22.07 | 22.76 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 20.4 | 22.02 |
| TraesCS5D01G446400.1 | Wheat | plastid | 27.76 | 21.78 |
| TraesCS3D01G536200.1 | Wheat | plastid | 21.74 | 18.79 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G188800.1 | EnsemblPlantsGene:TraesCS4D01G188800 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:328541524..328542423
Molecular Weight (calculated)
31885.7 Da
IEP (calculated)
9.400
GRAVY (calculated)
-0.256
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTAPTPRLR PKRATAPLDA AARARLAALP RSDDSSGSEH QAAALSSLVN DYLLETDTTV PSATLAVEGS SGLDDEPNGH TSSTAAADIL AEIKDNLDPT
101: GSSADELRRR LVFAVADAMR GLDDLRPNQS AFRRAVMSRL RERGHDAGLC KVRWDKSSGV TAGSYEYIDV IAGGGETRYI VDVGFAAEFE VARSTEEYEA
201: VRTALPEVLI ARPEHLRQVV KLAASASRRS LKSSGLSVPP WRKRRFMMTK WLGPYKRTVN SIPASAGTAL GGSGVVAVCR TIVGFAPQTT VGTSSGFWG
101: GSSADELRRR LVFAVADAMR GLDDLRPNQS AFRRAVMSRL RERGHDAGLC KVRWDKSSGV TAGSYEYIDV IAGGGETRYI VDVGFAAEFE VARSTEEYEA
201: VRTALPEVLI ARPEHLRQVV KLAASASRRS LKSSGLSVPP WRKRRFMMTK WLGPYKRTVN SIPASAGTAL GGSGVVAVCR TIVGFAPQTT VGTSSGFWG
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.