Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G400200.2 | Wheat | plastid | 97.17 | 97.17 |
| TraesCS1A01G392100.1 | Wheat | plastid | 94.16 | 94.83 |
| HORVU1Hr1G086590.2 | Barley | plastid | 92.92 | 77.89 |
| EES19937 | Sorghum | mitochondrion | 70.44 | 72.36 |
| Os05t0560100-01 | Rice | mitochondrion | 71.15 | 70.65 |
| Zm00001d038989_P002 | Maize | nucleus, plastid | 62.12 | 68.82 |
| Zm00001d009549_P002 | Maize | mitochondrion | 66.55 | 68.12 |
| TraesCS3B01G304200.1 | Wheat | plastid | 51.68 | 56.59 |
| TraesCS3B01G331000.1 | Wheat | nucleus | 43.54 | 52.9 |
| Bra018956.1-P | Field mustard | nucleus | 48.5 | 51.12 |
| CDY45633 | Canola | nucleus | 46.37 | 50.1 |
| Bra021162.1-P | Field mustard | nucleus | 38.23 | 49.77 |
| AT1G52240.1 | Thale cress | nucleus | 47.79 | 49.72 |
| Bra030396.1-P | Field mustard | nucleus | 47.08 | 49.53 |
| CDX87879 | Canola | nucleus | 46.37 | 47.04 |
| Bra027189.1-P | Field mustard | nucleus | 43.19 | 46.04 |
| CDY52982 | Canola | nucleus | 48.67 | 45.76 |
| CDY67259 | Canola | nucleus | 48.5 | 45.59 |
| CDX97723 | Canola | nucleus | 42.83 | 45.49 |
| CDY30136 | Canola | nucleus | 43.89 | 45.09 |
| AT3G16130.1 | Thale cress | nucleus | 42.65 | 44.8 |
| TraesCS5B01G339200.1 | Wheat | cytosol | 34.34 | 40.17 |
| CDY28381 | Canola | nucleus | 42.12 | 39.73 |
| TraesCS2B01G426300.1 | Wheat | cytosol | 31.86 | 38.71 |
| CDY20181 | Canola | nucleus | 41.42 | 38.55 |
| TraesCS6B01G449200.1 | Wheat | nucleus | 31.86 | 38.22 |
| TraesCS1B01G222700.1 | Wheat | plastid | 30.97 | 36.61 |
| TraesCS3B01G396500.1 | Wheat | cytosol | 34.87 | 36.55 |
| TraesCS1B01G289900.1 | Wheat | cytosol | 35.93 | 35.87 |
| TraesCS6B01G298000.1 | Wheat | cytosol | 28.5 | 29.65 |
| Bra021161.1-P | Field mustard | nucleus | 2.12 | 9.02 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G420200.1 | EnsemblPlantsGene:TraesCS1B01G420200 | Gene3D:1.20.58.1310 | Gene3D:1.20.58.2010 | GO:GO:0003674 | GO:GO:0005089 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR005512 | InterPro:PRONE_dom | InterPro:RopGEF | PANTHER:PTHR33101 |
| PANTHER:PTHR33101:SF3 | PFAM:PF03759 | PFscan:PS51334 | SEG:seg | MapMan:27.4.3.1 | : |
Description
No Description!
Coordinates
chr1B:-:643247526..643250470
Molecular Weight (calculated)
62556.5 Da
IEP (calculated)
6.973
GRAVY (calculated)
-0.559
Length
565 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPFLKTGH GRDSRFSFRR RKSGKASSTP SSPLSSVSSS ASSEDVVLDP GSPTMEPSTK TQTLPCARRM LSRSSCGSRG KLSVDLIPAP LAGGPSDAPR
101: PSTSAAPPPK PAPRPEGPPS DMDMVKEKFS KLLLGEDMSG SGKGVSSALA LSNAITNLAA SVFGEQRRLQ PMAPEQKARW TKEIDWLLSV ADFIVEFVPS
201: RQVAEDGSTM EVMITQQRRD LLMNVPALRK LDGMLLDYLD SFSDKQEFWY VKKNDNESEK GDPAEQSDKW WLPTVKVPPE GLSDSTRRWL HHQKELVNQV
301: LKATMAINAN VLMEMDIPEA YMETLPKNGK STLGDSMYKL ITDDYFDPEE LIATVDLSNE YNIVDLKNRI EASVVIWQKK MQRDGKWGHG VSHEKRGRFE
401: GRAENVLLLL KHRFPGISQS ALDISKIQYN KDVGSAILES YSRTLESLAY TVMSRIEDVL HADALAQDPK NGDSMRMPSL TTDDTDTVVQ DAKDEMGRLG
501: RMEPVNSTLF DYVGPRDGTI ETMILGSQDP QGKKLSKISK IGTKRYSYLD KLENLGGARS PISRH
101: PSTSAAPPPK PAPRPEGPPS DMDMVKEKFS KLLLGEDMSG SGKGVSSALA LSNAITNLAA SVFGEQRRLQ PMAPEQKARW TKEIDWLLSV ADFIVEFVPS
201: RQVAEDGSTM EVMITQQRRD LLMNVPALRK LDGMLLDYLD SFSDKQEFWY VKKNDNESEK GDPAEQSDKW WLPTVKVPPE GLSDSTRRWL HHQKELVNQV
301: LKATMAINAN VLMEMDIPEA YMETLPKNGK STLGDSMYKL ITDDYFDPEE LIATVDLSNE YNIVDLKNRI EASVVIWQKK MQRDGKWGHG VSHEKRGRFE
401: GRAENVLLLL KHRFPGISQS ALDISKIQYN KDVGSAILES YSRTLESLAY TVMSRIEDVL HADALAQDPK NGDSMRMPSL TTDDTDTVVQ DAKDEMGRLG
501: RMEPVNSTLF DYVGPRDGTI ETMILGSQDP QGKKLSKISK IGTKRYSYLD KLENLGGARS PISRH
001: MVPSLERGIS ITSSFNLDRM FDSSPGKEQQ QPHLAETTMP ESQTQDSLGG SPVETSRPMT SRLISRRQDK QQSETEMMKD RFTKLLLGED MSGGGKGVSS
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
101: ALALSNAITN LAASIFGEQT KLQPMAPDRR ARWKKEIDWL LSVTDHIVEF VPSQQISKEG VCTEIMVTRQ RGDLLMNIPA LRKLDAMLID TLDNFRGHNE
201: FWYVSRDSEE GKQARNERTK DKWWLPPVKV PPNGLSESAR RMLHFQKDSV SQVQKAAMAI NAQVLSEMAI PDSYIESLPK NGRVSLGDSL YKSITEEWFD
301: PEQFLSTLDL STEHKVLDVK NRIEASIVIW KRKLHLKDNK SSWGSAVSLE KRELFEERAE TILVLLKQKF PGLPQSSLDI SKIQYNKDVG HAVLESYSRI
401: LESLGYTEMS RIDDVLYADS LARKQCTGEE TSDGGKIATE TDSASAGSSN YSGEEIEKLE SQNSSKTTLL DFIGWSDNSS KGQSEKPPKS PRMTPKKLSY
501: LEKLENLNGF RSPKDRH
Arabidopsis Description
ROPGEF9Rop guanine nucleotide exchange factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.