Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 93.82 | 93.82 |
| TraesCS2B01G299400.1 | Wheat | nucleus, plastid | 91.17 | 92.64 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 79.51 | 88.41 |
| EES11990 | Sorghum | nucleus | 63.6 | 63.38 |
| Os04t0382800-00 | Rice | nucleus | 63.6 | 63.05 |
| Zm00001d003996_P001 | Maize | nucleus | 62.01 | 61.69 |
| Zm00001d025208_P002 | Maize | nucleus | 63.43 | 61.26 |
| TraesCS7A01G134600.1 | Wheat | nucleus | 42.58 | 41.62 |
| CDX70996 | Canola | nucleus | 23.32 | 27.79 |
| CDX88802 | Canola | nucleus | 22.97 | 27.78 |
| Bra001412.1-P | Field mustard | nucleus | 16.78 | 27.38 |
| Bra006620.1-P | Field mustard | nucleus | 21.73 | 27.27 |
| Bra002404.1-P | Field mustard | nucleus | 23.32 | 27.27 |
| CDX92367 | Canola | mitochondrion, plastid | 22.97 | 27.08 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 29.33 | 26.9 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 30.92 | 26.84 |
| CDY67997 | Canola | mitochondrion, plastid | 22.26 | 26.75 |
| Solyc06g074190.2.1 | Tomato | nucleus | 24.91 | 26.01 |
| CDY01038 | Canola | plastid | 27.92 | 25.9 |
| AT5G22310.1 | Thale cress | nucleus | 21.91 | 25.78 |
| AT3G11590.1 | Thale cress | plastid | 28.27 | 25.72 |
| PGSC0003DMT400067737 | Potato | nucleus | 25.8 | 25.57 |
| Solyc11g068720.1.1 | Tomato | nucleus | 28.62 | 25.55 |
| Bra034827.1-P | Field mustard | plastid | 27.56 | 25.41 |
| CDY08511 | Canola | plastid | 27.56 | 25.37 |
| CDX73866 | Canola | cytosol | 16.25 | 24.93 |
| PGSC0003DMT400015076 | Potato | nucleus | 24.91 | 24.78 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 28.8 | 24.77 |
| CDY56601 | Canola | cytosol, golgi, plastid | 16.08 | 24.66 |
| Solyc10g083190.1.1 | Tomato | plastid | 28.27 | 24.21 |
| PGSC0003DMT400072353 | Potato | plastid | 27.92 | 24.12 |
| KRH67971 | Soybean | plastid | 27.74 | 23.79 |
| KRH25284 | Soybean | plastid | 27.56 | 23.67 |
| KRG96225 | Soybean | nucleus | 27.39 | 23.66 |
| KRH30384 | Soybean | plastid | 27.03 | 23.11 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 21.73 | 21.47 |
| TraesCS2A01G256300.2 | Wheat | plastid | 20.32 | 18.67 |
| TraesCS1A01G317000.1 | Wheat | plastid | 21.2 | 18.15 |
| TraesCS2A01G469100.1 | Wheat | plastid | 21.38 | 17.46 |
| TraesCS7A01G295000.1 | Wheat | plastid | 18.37 | 16.56 |
| TraesCS7A01G344200.1 | Wheat | nucleus | 19.43 | 14.67 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G282200.1 | EnsemblPlantsGene:TraesCS2A01G282200 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF18 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:471514522..471517424
Molecular Weight (calculated)
63029.5 Da
IEP (calculated)
6.709
GRAVY (calculated)
-0.915
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGRGGEEGA AVRLARIRKR RALSSSDASN AARRLRSRRP AVLLIRRGRE GGAAMSDSSS RSRHCRRQVA DGASARRLVT AFWQSDKDRL FGEEQDVLLM
101: DKDASARRSL VPRSNASTEV SKSSRSRTKI KMFEEAGGRK GSCHNGHGQW PSADVNCSAM EIGTHPQDDV SRCPEEKATQ LKDLYNSLIA SKELAKVLAH
201: IWGELNPSTV SLISALRSEL DLARAHVRRL IKEQKAERSE IDDLKKELVE EMEAWKAKQK EKAATALQYV VTELDSEKKS RRRAERANEK LGAALADAES
301: SLRAANKELE RERKCRGRVE MMCGELVRGI GEDRAEVEAL KREAEDSQRE LEKEREMLHL ADEWREQRVQ MKLLEARLQF EEKNSALTQL HDELQACLDA
401: KKGQEPEKTD QMPSARASEN GGAASGPVPA PDNAGDGGFS EDCDSEGSDM HSIELNVDGN GNLHTWSYTP SSRRDRRVGA TTHGSFPEDR RTDDAGSRGG
501: DRKTSRETDD ALEGDWAEGC SHGVLNFDHD EERYQAIKDL REQMLAGSGL LMSQGRETAQ SQYCIF
101: DKDASARRSL VPRSNASTEV SKSSRSRTKI KMFEEAGGRK GSCHNGHGQW PSADVNCSAM EIGTHPQDDV SRCPEEKATQ LKDLYNSLIA SKELAKVLAH
201: IWGELNPSTV SLISALRSEL DLARAHVRRL IKEQKAERSE IDDLKKELVE EMEAWKAKQK EKAATALQYV VTELDSEKKS RRRAERANEK LGAALADAES
301: SLRAANKELE RERKCRGRVE MMCGELVRGI GEDRAEVEAL KREAEDSQRE LEKEREMLHL ADEWREQRVQ MKLLEARLQF EEKNSALTQL HDELQACLDA
401: KKGQEPEKTD QMPSARASEN GGAASGPVPA PDNAGDGGFS EDCDSEGSDM HSIELNVDGN GNLHTWSYTP SSRRDRRVGA TTHGSFPEDR RTDDAGSRGG
501: DRKTSRETDD ALEGDWAEGC SHGVLNFDHD EERYQAIKDL REQMLAGSGL LMSQGRETAQ SQYCIF
001: MERSGTGSRQ RRASSTVQKL RLGDCNVGAR DPINSGSFMD IETRSRVETP TGSTVGVKTR LKDCSNALTT SKELLKIINR MWGQDDRPSS SMSLVSALHS
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.