Factsheet for TraesCS6D01G319000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G119600.1
TraesCS5A01G194900.2
TraesCS5B01G116300.1
TraesCS5B01G190300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS5D01G198100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45920.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5D01G126000.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G45920.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G45920.1	TraesCS5D01G198100.1	AT2G46550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83380	Canola	cytosol	28.8	31.45
Bra000412.1-P	Field mustard	cytosol	28.8	31.45
Bra007601.1-P	Field mustard	cytosol	17.48	30.34
Bra033242.1-P	Field mustard	nucleus	23.95	28.35
AT1G01680.1	Thale cress	cytosol	27.83	27.92
CDX89113	Canola	cytosol	30.42	27.57
Bra014439.1-P	Field mustard	cytosol	30.42	27.57
CDY42501	Canola	cytosol	30.1	27.27
CDY15161	Canola	cytosol	26.86	27.12
CDX90051	Canola	cytosol	26.21	26.38
Bra014438.1-P	Field mustard	cytosol	22.65	25.18
CDY27349	Canola	cytosol	21.36	24.81
CDY48922	Canola	cytosol	23.3	24.74
CDX89114	Canola	cytosol	22.65	24.56
CDY37075	Canola	cytosol	20.71	24.06
Bra039304.1-P	Field mustard	cytosol	20.71	24.06
CDY42502	Canola	cytosol	21.04	23.81
CDX71740	Canola	cytosol	20.71	23.62
AT2G45920.1	Thale cress	cytosol	30.1	23.25
CDY18888	Canola	nucleus	21.36	23.16
Bra003448.1-P	Field mustard	nucleus	31.72	23.11
CDX74775	Canola	cytosol	21.04	22.89
Bra007600.1-P	Field mustard	cytosol	32.04	22.6
CDY48923	Canola	cytosol	32.04	22.6
Bra004948.1-P	Field mustard	cytosol	20.71	22.54
CDX95679	Canola	cytosol, extracellular, plastid	9.39	22.48
TraesCS1D01G211100.1	Wheat	cytosol	21.68	21.97
CDY51567	Canola	nucleus	28.48	21.57
AT3G61390.2	Thale cress	cytosol	29.77	21.15
AT3G61410.3	Thale cress	cytosol	20.71	19.39
AT1G01670.1	Thale cress	nucleus	22.65	19.18
TraesCS1D01G211200.1	Wheat	cytosol	23.95	18.32
HORVU5Hr1G077580.3	Barley	plastid	11.0	17.99
CDX90050	Canola	nucleus	32.36	17.57
AT1G01660.2	Thale cress	nucleus	31.72	17.22
CDX71741	Canola	nucleus	22.33	17.08
CDY15162	Canola	nucleus	30.42	16.55
Bra033244.1-P	Field mustard	cytosol	28.48	16.48
Bra033243.1-P	Field mustard	cytosol, plastid	26.54	15.89
Bra010318.1-P	Field mustard	cytosol	24.27	13.61
CDY54713	Canola	cytosol	28.48	11.03
Bra037819.1-P	Field mustard	cytosol	28.16	10.9
CDX81289	Canola	cytosol	28.16	10.89
KRH39466	Soybean	cytosol	27.83	10.75
CDY67215	Canola	cytosol	27.18	10.53
KRG99475	Soybean	cytosol	27.18	10.53
AT5G65500.2	Thale cress	cytosol	27.18	10.51
CDY14575	Canola	cytosol	26.86	10.4
Bra024393.1-P	Field mustard	cytosol	26.86	10.4
KRH74477	Soybean	cytosol	26.54	10.24
PGSC0003DMT400041610	Potato	cytosol	14.24	8.45
VIT_00s0772g00010.t01	Wine grape	cytosol	17.48	8.26
Solyc11g010700.1.1	Tomato	cytosol	14.56	5.64

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR27003	PANTHER:PTHR27003:SF74	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS6D01G319000	EnsemblPlants:TraesCS6D01G319000.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd01989	TIGR:cd16655
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:427129648..427156741

Molecular Weight (calculated)

35560.6 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.584

Length

309 amino acids

Sequence
(BLAST)

001: MVLWALHKFP KDTAFVLLHV CSQPKLIPIM GARIPARQVQ EQELTSYKKM ELQRINDSLD QHLLLCAQEK VQAEKLVVES DDVAEGLVQL ITEHHVTALV
101: MGAAADKHYT KKMKALKSKK AQVVEQRADP SCKIWYICKG TLVYRRKAVP LSHGARPQGT QKPGAQQFSV DRSTSLSEMW CVSNTWLHKP NLRRSDANEK
201: ETVHEFDEGD NKFQHMLREL ESVRKQAYED NCSREKAERE LFEAFQKDIM REPLIAADGF TYEAEAIREW IDNGHHTSPM TNLELLHRDL LPNHALRSTI
301: QEWLQTNAN

Best Arabidopsis Sequence Match ( AT1G01680.1 )
(BLAST)

001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR

Arabidopsis Description

PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.