CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90050	Canola	nucleus	93.66	93.5
Bra033244.1-P	Field mustard	cytosol	78.52	83.52
AT1G01660.2	Thale cress	nucleus	81.34	81.2
CDX89113	Canola	cytosol	23.94	39.88
CDY42501	Canola	cytosol	23.24	38.71
CDX90051	Canola	cytosol	20.6	38.11
CDY15161	Canola	cytosol	20.07	37.25
CDY58794	Canola	nucleus	10.56	36.81
CDX95679	Canola	cytosol, extracellular, plastid	8.27	36.43
CDX83380	Canola	cytosol	17.96	36.04
CDY51567	Canola	nucleus	25.53	35.54
CDY48923	Canola	cytosol	27.11	35.16
TraesCS6D01G319000.1	Wheat	cytosol	16.55	30.42
CDX71741	Canola	nucleus	20.6	28.96
Os10t0552400-01	Rice	cytosol	21.48	28.31
CDY27349	Canola	cytosol	12.68	27.07
CDY37075	Canola	cytosol	12.5	26.69
CDX74775	Canola	cytosol	13.03	26.06
CDY18888	Canola	nucleus	12.85	25.61
TraesCS1A01G207800.1	Wheat	cytosol	12.68	25.0
CDX89114	Canola	cytosol	12.5	24.91
TraesCS1B01G221500.1	Wheat	cytosol	13.03	24.83
Zm00001d029847_P001	Maize	cytosol	21.83	24.31
TraesCS1D01G211100.1	Wheat	cytosol	13.03	24.26
TraesCS1D01G211200.1	Wheat	cytosol	17.25	24.26
TraesCS1A01G207900.1	Wheat	cytosol	17.61	23.87
Os10t0548850-00	Rice	cytosol	16.9	23.7
CDY42502	Canola	cytosol	11.27	23.44
CDY48922	Canola	cytosol	11.8	23.02
CDX71740	Canola	cytosol	10.92	22.88
TraesCS1B01G221900.1	Wheat	cytosol	13.73	22.35
HORVU1Hr1G053230.7	Barley	cytosol	9.15	21.85
HORVU1Hr1G053260.5	Barley	cytosol	15.49	21.73
CDY26075	Canola	cytosol	17.78	20.12
CDY08273	Canola	cytosol	17.25	19.76
OQU92181	Sorghum	endoplasmic reticulum	19.54	19.24
CDY14575	Canola	cytosol	24.65	17.54
CDY54713	Canola	cytosol	24.3	17.29
CDX81289	Canola	cytosol	24.3	17.27
HORVU5Hr1G077580.3	Barley	plastid	5.63	16.93
CDY67215	Canola	cytosol	23.77	16.92

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	GO:A0A078FQN5	UniProt:A0A078FQN5	EnsemblPlants:CDY15162
ProteinID:CDY15162	ProteinID:CDY15162.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00085338001	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF57850
UniPathway:UPA00143	UniParc:UPI0004EEE861	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC05g00410DBnaC05g00410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQN5]

Coordinates

chrLK032052:+:190973..194521

Molecular Weight (calculated)

66172.3 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.863

Length

568 amino acids

Sequence
(BLAST)

001: MAELMAMGND VVHVAVKNDV KESRSTLVWA LRNLGAKKVC ILHVYQPNTA SPAARKLEEL EAIMYETLHD YFDICQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDRD YSEKMFDLKS RKAKYVYQHA PSSCEVTFMC NGHLIYTKEA NLEDRVDETE AEAGQWKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PTASEDQSES DRNDQLYRQL KQALIEVEES KREAYEECVR RFKSENAAVE AIRKAREYEA MFNEETRLRK ESKEALTKQR KMVEKTKQER
301: DDALIIILNG RKLYSEELRR RVEAEEMLGK EKEEHERTKK ELEEVRVIVQ DGTLYNEQLR QRKEMEESVK RQEEELEKTK KEKEEACLIS KNLMQLYEDE
401: VRQRKETEEL VKRRREEVEK VRKEKEEACS VGQNFMRLYE EEARRRKGTE EELSKVAAEK DAASSVCSDI LLLLQSYTRR HGIPSGFSDE DSVTRQPPSY
501: FICPISQEVM REPRVAADGF TYEAEALKEW LDNGHETSPM TNLKLTHNNL VPNHALRSAI QEWLQRNS

Best Arabidopsis Sequence Match ( AT1G01660.1 )
(BLAST)

001: MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
301: DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGTLYNEQLR HRKEMEESMK RQEEELEKTK KEKEEACMIS KNLMQLYEDE
401: VRQRKEAEEL VKRRREELEK VKKEKEEACS VGQNFMRLYE EEARRRKGTE EELSKVAAEK DAASSVCSEI LLLLQSYTRR HGTPSGFSDE DSVTRQPPSY
501: FICPISQEVM REPRVAADGF TYEAESLREW LDNGHETSPM TNLKLAHNNL VPNHALRSAI QEWLQRNS

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G01660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.