Factsheet for AT1G01660.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90050	Canola	nucleus	83.83	83.83
Bra033244.1-P	Field mustard	cytosol	77.86	82.96
CDY15162	Canola	nucleus	81.2	81.34
AT1G01680.1	Thale cress	cytosol	22.14	40.91
AT2G45920.1	Thale cress	cytosol	26.19	37.25
AT3G61390.2	Thale cress	cytosol	26.19	34.25
AT1G01670.1	Thale cress	nucleus	20.56	32.05
TraesCS6D01G319000.1	Wheat	cytosol	17.22	31.72
Os10t0552400-01	Rice	cytosol	21.62	28.54
TraesCS1A01G207800.1	Wheat	cytosol	13.88	27.43
TraesCS1B01G221500.1	Wheat	cytosol	13.71	26.17
TraesCS1D01G211200.1	Wheat	cytosol	18.28	25.74
TraesCS1A01G207900.1	Wheat	cytosol	18.63	25.3
TraesCS1D01G211100.1	Wheat	cytosol	13.53	25.25
Zm00001d029847_P001	Maize	cytosol	21.62	24.12
TraesCS1B01G221900.1	Wheat	cytosol	14.76	24.07
Os10t0548850-00	Rice	cytosol	17.05	23.95
HORVU1Hr1G053230.7	Barley	cytosol	10.02	23.95
AT1G56040.1	Thale cress	cytosol	17.57	23.81
HORVU1Hr1G053260.5	Barley	cytosol	16.52	23.21
AT1G56030.1	Thale cress	cytosol	14.94	21.74
AT3G61410.3	Thale cress	cytosol	11.78	20.3
OQU92181	Sorghum	endoplasmic reticulum	20.21	19.93
HORVU5Hr1G077580.3	Barley	plastid	6.15	18.52
AT5G65500.2	Thale cress	cytosol	22.85	16.27

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	EntrezGene:839461	UniProt:A0A1P8AQW1	ProteinID:ANM59051.1
ArrayExpress:AT1G01660	EnsemblPlantsGene:AT1G01660	RefSeq:AT1G01660	TAIR:AT1G01660	RefSeq:AT1G01660-TAIR-G	EnsemblPlants:AT1G01660.2
Unigene:At.51449	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	RefSeq:NP_001321445.1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI000848475E
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G01660]

Coordinates

chr1:-:239841..242703

Molecular Weight (calculated)

66197.4 Da

IEP (calculated)

5.204

GRAVY (calculated)

-0.868

Length

569 amino acids

Sequence
(BLAST)

001: MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
301: DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGMQLYNEQL RHRKEMEESM KRQEEELEKT KKEKEEACMI SKNLMQLYED
401: EVRQRKEAEE LVKRRREELE KVKKEKEEAC SVGQNFMRLY EEEARRRKGT EEELSKVAAE KDAASSVCSE ILLLLQSYTR RHGTPSGFSD EDSVTRQPPS
501: YFICPISQEV MREPRVAADG FTYEAESLRE WLDNGHETSP MTNLKLAHNN LVPNHALRSA IQEWLQRNS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.