CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15162	Canola	nucleus	93.5	93.66
Bra033244.1-P	Field mustard	cytosol	82.6	88.02
AT1G01660.2	Thale cress	nucleus	83.83	83.83
CDX89113	Canola	cytosol	23.55	39.3
CDX90051	Canola	cytosol	21.09	39.09
CDY15161	Canola	cytosol	20.56	38.24
CDY42501	Canola	cytosol	22.85	38.12
CDX95679	Canola	cytosol, extracellular, plastid	8.61	37.98
CDX83380	Canola	cytosol	18.8	37.81
CDY58794	Canola	nucleus	10.54	36.81
CDY51567	Canola	nucleus	25.83	36.03
CDY48923	Canola	cytosol	26.89	34.93
TraesCS6D01G319000.1	Wheat	cytosol	17.57	32.36
Os10t0552400-01	Rice	cytosol	21.79	28.77
CDX71741	Canola	nucleus	20.39	28.71
CDY27349	Canola	cytosol	13.18	28.2
CDY37075	Canola	cytosol	13.01	27.82
CDX74775	Canola	cytosol	13.53	27.11
CDY18888	Canola	nucleus	13.36	26.67
TraesCS1A01G207800.1	Wheat	cytosol	13.36	26.39
TraesCS1B01G221500.1	Wheat	cytosol	13.53	25.84
CDX89114	Canola	cytosol	12.83	25.61
TraesCS1D01G211100.1	Wheat	cytosol	13.53	25.25
TraesCS1D01G211200.1	Wheat	cytosol	17.75	25.0
TraesCS1A01G207900.1	Wheat	cytosol	18.28	24.82
Zm00001d029847_P001	Maize	cytosol	21.97	24.51
Os10t0548850-00	Rice	cytosol	17.22	24.2
CDY42502	Canola	cytosol	11.6	24.18
HORVU1Hr1G053230.7	Barley	cytosol	9.84	23.53
CDY48922	Canola	cytosol	11.95	23.37
CDX71740	Canola	cytosol	11.07	23.25
TraesCS1B01G221900.1	Wheat	cytosol	14.06	22.92
HORVU1Hr1G053260.5	Barley	cytosol	15.99	22.47
CDY26075	Canola	cytosol	17.4	19.72
OQU92181	Sorghum	endoplasmic reticulum	19.86	19.58
CDY08273	Canola	cytosol	16.87	19.35
HORVU5Hr1G077580.3	Barley	plastid	6.33	19.05
CDY54713	Canola	cytosol	23.37	16.67
CDX81289	Canola	cytosol	23.37	16.65
CDY14575	Canola	cytosol	23.2	16.54
CDY67215	Canola	cytosol	22.5	16.04

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	GO:A0A078DLJ6	EnsemblPlants:CDX90050	ProteinID:CDX90050
ProteinID:CDX90050.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00150553001	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF57850	UniPathway:UPA00143
UniParc:UPI0004EEC7BB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaA10g00320D

Coordinates

chrLK031861:-:1426474..1429240

Molecular Weight (calculated)

66308.6 Da

IEP (calculated)

5.267

GRAVY (calculated)

-0.863

Length

569 amino acids

Sequence
(BLAST)

001: MAELMAMGDD VVHVAVKNDV KESRSTLVWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDICQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVTFMC NGHLIYTKEA NLEDRVDETE AEAGQWKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PTSSEDQSES DRNDQLYRQL KQALIEVEES KREAYEECVR RFKAENTAVE AIRKAREYEA MFNEETRLRK EGKEALAKQK KMVEKTKQER
301: DDALIIILNG RKLYSEEVRR RVEAEEMLGK EKEEHERTKK ELEEVRVIVQ DGMKLYNEQL RQRKEMEESV KRQEEELEKT KKEKEEACLI SKNLMQLYED
401: EVRQRKETEE LVKRRREEVE KVRKEKEEAC SVGQNFMRLY EEEARRRKGT EEELSKVAAE KDAASSVCSD IMLLLQSYTR RHGIPSGFSD EDSLTRQPPS
501: YFICPISQEV MREPRVAADG FTYEAEALKE WLDNGHETSP MTNLKLTHNN LVPNHALRSA IQEWLQRNS

Best Arabidopsis Sequence Match ( AT1G01660.2 )
(BLAST)

001: MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
301: DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGMQLYNEQL RHRKEMEESM KRQEEELEKT KKEKEEACMI SKNLMQLYED
401: EVRQRKEAEE LVKRRREELE KVKKEKEEAC SVGQNFMRLY EEEARRRKGT EEELSKVAAE KDAASSVCSE ILLLLQSYTR RHGTPSGFSD EDSVTRQPPS
501: YFICPISQEV MREPRVAADG FTYEAESLRE WLDNGHETSP MTNLKLAHNN LVPNHALRSA IQEWLQRNS

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G01660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.