Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003448.1-P | Field mustard | nucleus | 91.91 | 88.44 |
| CDY58794 | Canola | nucleus | 25.49 | 63.8 |
| CDY48923 | Canola | cytosol | 67.65 | 63.01 |
| CDY42501 | Canola | cytosol | 49.51 | 59.24 |
| CDX89113 | Canola | cytosol | 49.26 | 58.94 |
| CDX71741 | Canola | nucleus | 55.88 | 56.44 |
| AT3G61390.2 | Thale cress | cytosol | 55.88 | 52.41 |
| CDX83380 | Canola | cytosol | 23.77 | 34.28 |
| CDX90051 | Canola | cytosol | 23.77 | 31.6 |
| CDY15161 | Canola | cytosol | 23.28 | 31.05 |
| CDX89114 | Canola | cytosol | 21.57 | 30.88 |
| CDX74775 | Canola | cytosol | 20.83 | 29.93 |
| CDY18888 | Canola | nucleus | 20.83 | 29.82 |
| CDY27349 | Canola | cytosol | 18.87 | 28.95 |
| CDY37075 | Canola | cytosol | 18.87 | 28.95 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 21.57 | 28.48 |
| CDY42502 | Canola | cytosol | 18.14 | 27.11 |
| CDY48922 | Canola | cytosol | 18.87 | 26.46 |
| CDX90050 | Canola | nucleus | 36.03 | 25.83 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 8.09 | 25.58 |
| CDY15162 | Canola | nucleus | 35.54 | 25.53 |
| CDX71740 | Canola | cytosol | 16.42 | 24.72 |
| Os10t0552400-01 | Rice | cytosol | 25.98 | 24.59 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 17.89 | 24.5 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 17.16 | 24.31 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 18.14 | 24.26 |
| Os10t0548850-00 | Rice | cytosol | 23.04 | 23.21 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 23.53 | 22.91 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 13.24 | 22.69 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 22.3 | 22.52 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 21.57 | 21.73 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 18.14 | 21.2 |
| Zm00001d029847_P001 | Maize | cytosol | 25.98 | 20.78 |
| OQU92181 | Sorghum | endoplasmic reticulum | 27.45 | 19.41 |
| HORVU5Hr1G077580.3 | Barley | plastid | 8.33 | 17.99 |
| CDY26075 | Canola | cytosol | 21.32 | 17.33 |
| CDY08273 | Canola | cytosol | 20.83 | 17.14 |
| CDY54713 | Canola | cytosol | 24.02 | 12.28 |
| CDX81289 | Canola | cytosol | 24.02 | 12.27 |
| CDY67215 | Canola | cytosol | 23.04 | 11.78 |
| CDY14575 | Canola | cytosol | 23.04 | 11.78 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078INQ8 | UniProt:A0A078INQ8 | EnsemblPlants:CDY51567 | ProteinID:CDY51567 |
| ProteinID:CDY51567.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00003752001 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 |
| PANTHER:PTHR27003:SF52 | SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE4551 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaCnng20960DBnaCnng20960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INQ8]
Coordinates
chrLK033006:+:65965..68437
Molecular Weight (calculated)
46693.0 Da
IEP (calculated)
7.979
GRAVY (calculated)
-0.569
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSTRDGGS DDGESMKISN RKVVMDEKIY VAVTKRDLES KSSLVWAIQN TGGREFCIVY VHQPKYFETI LMVSICLNCY KRCFGFLNLN AETIYIEMDS
101: IEEGILQLIS QHGIKKLVMG AAADRHYSMK MRDLQSKKAI YIRREAPDTC HIWFPCNGYL IFTREARRRE ILYLEGTSSS YLSQSKITKG TERVPSSSMA
201: KDDVGNQVAL IEAERAKRET LFEASKREEA EKSAIDAIKR AKESENRYLN ELKRRKETEK ALKEAKEELE KMRSESETRI AESKLKIKLS KLSKLRSKRE
301: GEEVSPSRDP ELPQYFLCPI TQDVMEDPQV AADGFTYEGE AIRCWLDSGH ETSPMTNKRL IHTSLVPNLA LRSAIQEWLQ DSSSWIIEPD PLFVKDLIKR
401: SLKSLEAN
101: IEEGILQLIS QHGIKKLVMG AAADRHYSMK MRDLQSKKAI YIRREAPDTC HIWFPCNGYL IFTREARRRE ILYLEGTSSS YLSQSKITKG TERVPSSSMA
201: KDDVGNQVAL IEAERAKRET LFEASKREEA EKSAIDAIKR AKESENRYLN ELKRRKETEK ALKEAKEELE KMRSESETRI AESKLKIKLS KLSKLRSKRE
301: GEEVSPSRDP ELPQYFLCPI TQDVMEDPQV AADGFTYEGE AIRCWLDSGH ETSPMTNKRL IHTSLVPNLA LRSAIQEWLQ DSSSWIIEPD PLFVKDLIKR
401: SLKSLEAN
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.