CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13800
KXG35486
OQU78843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45920.1	OQU78843	AT1G34430.1	21798944
AT2G45920.1	EES13800	AT2G46550.1	21798944
AT2G45920.1	KXG35486	AT2G46550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029847_P001	Maize	cytosol	58.58	66.27
TraesCS1A01G207800.1	Wheat	cytosol	29.12	58.33
Os10t0552400-01	Rice	cytosol	43.33	58.0
TraesCS1B01G221500.1	Wheat	cytosol	29.29	56.71
TraesCS1D01G211100.1	Wheat	cytosol	29.81	56.39
HORVU1Hr1G053230.7	Barley	cytosol	22.18	53.78
TraesCS1B01G221900.1	Wheat	cytosol	32.06	53.01
TraesCS1D01G211200.1	Wheat	cytosol	35.01	50.0
TraesCS1A01G207900.1	Wheat	cytosol	35.53	48.93
HORVU1Hr1G053260.5	Barley	cytosol	34.14	48.64
Bra007601.1-P	Field mustard	cytosol	9.36	30.34
Bra000412.1-P	Field mustard	cytosol	13.69	27.92
CDX83380	Canola	cytosol	13.69	27.92
Bra033242.1-P	Field mustard	nucleus	12.48	27.59
Bra014439.1-P	Field mustard	cytosol	16.29	27.57
CDX89113	Canola	cytosol	16.29	27.57
CDY51567	Canola	nucleus	19.41	27.45
AT1G01680.1	Thale cress	cytosol	14.38	26.95
Bra007600.1-P	Field mustard	cytosol	20.45	26.94
CDY48923	Canola	cytosol	20.45	26.94
CDY15161	Canola	cytosol	14.21	26.8
CDX90051	Canola	cytosol	14.21	26.71
Bra039304.1-P	Field mustard	cytosol	12.3	26.69
CDY37075	Canola	cytosol	12.3	26.69
CDY42501	Canola	cytosol	15.77	26.69
Bra003448.1-P	Field mustard	nucleus	19.41	26.42
AT2G45920.1	Thale cress	cytosol	18.2	26.25
CDY27349	Canola	cytosol	11.79	25.56
AT3G61390.2	Thale cress	cytosol	19.06	25.29
CDY18888	Canola	nucleus	12.3	24.91
CDX74775	Canola	cytosol	12.13	24.65
Bra014438.1-P	Field mustard	cytosol	11.79	24.46
Bra004948.1-P	Field mustard	cytosol	11.96	24.3
CDX89114	Canola	cytosol	11.96	24.21
CDY48922	Canola	cytosol	11.79	23.37
CDX71740	Canola	cytosol	10.92	23.25
CDX71741	Canola	nucleus	15.77	22.52
AT1G01670.1	Thale cress	nucleus	14.04	22.19
AT3G61410.3	Thale cress	cytosol	12.3	21.52
CDY42502	Canola	cytosol	10.05	21.25
Bra033244.1-P	Field mustard	cytosol	18.72	20.22
AT1G01660.2	Thale cress	nucleus	19.93	20.21
Bra033243.1-P	Field mustard	cytosol, plastid	18.02	20.16
CDX90050	Canola	nucleus	19.58	19.86
CDY15162	Canola	nucleus	19.24	19.54
Bra010318.1-P	Field mustard	cytosol	16.46	17.24
CDX95679	Canola	cytosol, extracellular, plastid	3.81	17.05
KRH74477	Soybean	cytosol	19.06	13.73
KRH39466	Soybean	cytosol	18.89	13.62
Bra037819.1-P	Field mustard	cytosol	17.85	12.91
VIT_00s0772g00010.t01	Wine grape	cytosol	14.56	12.84
CDY54713	Canola	cytosol	17.68	12.78
CDY14575	Canola	cytosol	17.68	12.78
KRG99475	Soybean	cytosol	17.5	12.66
CDY67215	Canola	cytosol	17.5	12.66
Bra024393.1-P	Field mustard	cytosol	17.5	12.66
AT5G65500.2	Thale cress	cytosol	17.5	12.64
CDX81289	Canola	cytosol	17.33	12.52
PGSC0003DMT400041610	Potato	cytosol	9.88	10.94
Solyc11g010700.1.1	Tomato	cytosol	11.44	8.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1Z5S8D9	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	EnsemblPlants:OQU92181	ProteinID:OQU92181
ProteinID:OQU92181.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504
EnsemblPlantsGene:SORBI_3001G305800	SUPFAM:SSF57850	unigene:Sbi.9002	UniParc:UPI000B423A07	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:58991748..58995101

Molecular Weight (calculated)

64290.0 Da

IEP (calculated)

5.903

GRAVY (calculated)

-0.304

Length

577 amino acids

Sequence
(BLAST)

001: MSQSTVQGIM KQAEILSDVT SAHTELRTTG SLGTSSLSLY VSVACHWLPP RTVSLSRVQS LLYVILSPNV CVFLMPLAIR QGALSNLGFT ANSAKKLAAM
101: EKVFVVLPAE FKAGQSTLSW VLDHFSGGRT TVVITHVHVP PQMIPVMGVK FHSSKLSPEQ VKLFRRIEYE KVDKQLDGYV HQCSKMKVKC EKLVFEKEDD
201: VAGLIELIVL HKVTKLIISG AADRQYSRKM DKPKSKTATE IMQRADPSCK IWCVCKGQLI CTRGEEEEIA PSATPFVPDF DHQALQLVPY QKEDDVKSEL
301: GLYDELKEAC IAAENLMKRA LNESSRRQKA DGEVASALQK AKEYQELYLE ETRKREELEG ALARAHREIA RLRQANQVLP LDEQNKATDE LQEAMSERSS
401: LEGHIFNMDA VFGTAAGQAT EQQQKEHVQI QFDLGTGEKD LELELELEAL LNQSKLAAFS PSSVIQSPYE FDEDRVPSYF LCPILQEAMR DPHVAADGFT
501: YEGDAIRGWL DGGNDASPVT GQPLAHRELA PNLALAAVIQ DYTVMMMKKR RQYRFGDSHD NTVAALQFLS SPVGSER

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.