Factsheet for Bra003448.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51567	Canola	nucleus	88.44	91.91
Bra007600.1-P	Field mustard	cytosol	70.05	67.81
Bra014439.1-P	Field mustard	cytosol	51.18	63.64
AT3G61390.2	Thale cress	cytosol	58.96	57.47
Bra007601.1-P	Field mustard	cytosol	17.69	42.13
Bra014438.1-P	Field mustard	cytosol	23.11	35.25
Bra000412.1-P	Field mustard	cytosol	23.35	34.98
Bra004948.1-P	Field mustard	cytosol	22.41	33.45
Bra033242.1-P	Field mustard	nucleus	19.81	32.18
TraesCS6D01G319000.1	Wheat	cytosol	23.11	31.72
Bra039304.1-P	Field mustard	cytosol	19.58	31.2
TraesCS1A01G207800.1	Wheat	cytosol	18.4	27.08
TraesCS1D01G211100.1	Wheat	cytosol	19.34	26.89
TraesCS1B01G221500.1	Wheat	cytosol	18.87	26.85
HORVU1Hr1G053230.7	Barley	cytosol	14.15	25.21
Bra033244.1-P	Field mustard	cytosol	31.6	25.09
Os10t0552400-01	Rice	cytosol	25.47	25.06
Bra033243.1-P	Field mustard	cytosol, plastid	30.42	25.0
Os10t0548850-00	Rice	cytosol	22.64	23.7
TraesCS1A01G207900.1	Wheat	cytosol	23.11	23.39
TraesCS1D01G211200.1	Wheat	cytosol	22.17	23.27
HORVU1Hr1G053260.5	Barley	cytosol	21.46	22.47
TraesCS1B01G221900.1	Wheat	cytosol	18.4	22.35
Bra010318.1-P	Field mustard	cytosol	27.59	21.23
HORVU5Hr1G077580.3	Barley	plastid	9.43	21.16
Zm00001d029847_P001	Maize	cytosol	25.0	20.78
OQU92181	Sorghum	endoplasmic reticulum	26.42	19.41
Bra037092.1-P	Field mustard	cytosol	20.75	17.74
Bra037819.1-P	Field mustard	cytosol	24.29	12.91
Bra024393.1-P	Field mustard	cytosol	23.58	12.53

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	EnsemblPlantsGene:Bra003448	EnsemblPlants:Bra003448.1	EnsemblPlants:Bra003448.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	UniProt:M4CGW5	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR27003
PANTHER:PTHR27003:SF52	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF57850	UniParc:UPI0002541860
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G61390 (E=1e-078) | U-box domain-containing protein

Coordinates

chrA07:+:13246939..13251515

Molecular Weight (calculated)

48714.4 Da

IEP (calculated)

9.669

GRAVY (calculated)

-0.724

Length

424 amino acids

Sequence
(BLAST)

001: MAGSTRDGGS DDGESMKISN RKVVMDEKIY VAVTKRDLES KSSLVWAIQN TGGREFCIVY VHQPVHISIP GARFHEHKLR RYRKKKKRAL NNLDKYLHIC
101: RQMQVSAETI YIEMDSIEEG ILQLISQHGI KKLVMGAAAD RHYSMKMRDL QSKKAIYIRR EAPDTCHIWF PCNGYLIFTR EARRREILYL EGTSSSYLSQ
201: SKITKGTERV PSSSVAKDDV GNQVALKEAE RAKRETLFEA SKREEAEKSA NDAIKRAKES ENRYLNELKR RKETEKALKE AKEQLEKMRS ESESRIAESK
301: LKIKLRKVSK LKSKREGEEV SPSRDPELPQ YFLCPITQDV MEDPQVAADG FTYEGEAIRC WLDSGHETSP MTNKRLIHTS LVPNLSLRSA IQEWLQDSSS
401: WIIEPDPLFV KDLIKRSLKS LEAS

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.