Factsheet for Bra010318.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000412.1-P	Field mustard	cytosol	22.87	44.52
Bra033242.1-P	Field mustard	nucleus	20.15	42.53
Bra033243.1-P	Field mustard	cytosol, plastid	39.2	41.86
Bra014439.1-P	Field mustard	cytosol	18.69	30.21
Bra007601.1-P	Field mustard	cytosol	9.07	28.09
Bra003448.1-P	Field mustard	nucleus	21.23	27.59
Bra007600.1-P	Field mustard	cytosol	21.05	26.48
Bra033244.1-P	Field mustard	cytosol	24.14	24.91
TraesCS6D01G319000.1	Wheat	cytosol	13.61	24.27
HORVU1Hr1G053230.7	Barley	cytosol	10.34	23.95
Bra004948.1-P	Field mustard	cytosol	12.16	23.59
Bra039304.1-P	Field mustard	cytosol	11.07	22.93
Bra014438.1-P	Field mustard	cytosol	11.25	22.3
Os10t0552400-01	Rice	cytosol	17.42	22.27
TraesCS1A01G207800.1	Wheat	cytosol	11.62	22.22
TraesCS1B01G221500.1	Wheat	cytosol	11.8	21.81
TraesCS1D01G211100.1	Wheat	cytosol	11.8	21.31
HORVU5Hr1G077580.3	Barley	plastid	7.26	21.16
Os10t0548850-00	Rice	cytosol	15.43	20.99
TraesCS1B01G221900.1	Wheat	cytosol	12.89	20.34
TraesCS1D01G211200.1	Wheat	cytosol	14.88	20.3
TraesCS1A01G207900.1	Wheat	cytosol	15.24	20.05
HORVU1Hr1G053260.5	Barley	cytosol	14.34	19.51
Zm00001d029847_P001	Maize	cytosol	17.42	18.82
OQU92181	Sorghum	endoplasmic reticulum	17.24	16.46
Bra037092.1-P	Field mustard	cytosol	12.52	13.91
Bra037819.1-P	Field mustard	cytosol	15.43	10.65
Bra024393.1-P	Field mustard	cytosol	15.43	10.65

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra010318	EnsemblPlants:Bra010318.1	EnsemblPlants:Bra010318.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	UniProt:M4D1G8	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI00025472A1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G01670 (E=2e-091) | U-box domain-containing protein

Coordinates

chrA08:+:13851598..13855730

Molecular Weight (calculated)

61165.9 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.396

Length

551 amino acids

Sequence
(BLAST)

001: MAEALIDDPV YVAVSTDVSE SRLTLTWALR HLQPKKLYLL HVHQPISINP TSSGLEQSEI DAIQESELTS SYEILLKYRD ICAVEGILEQ DVDISYSLAN
101: NVGEGIVELI YENNIKKLIM GAAADSHNSE DMVNITSRKF DYVTKHAPHC CKIWLVGNGN LIHTREGRFD RRGSPHPSSE SLTSLQGLDS ALVPYEEAVR
201: GEHDNVSHAL SSPEDQSARG FETMYYEEQR RGLEIEERRI KAEEDLRAEI ENMKGIQKEL EEQLYIDCPR QFEMFQRERD EAMKTTVELL RLLNLDNSES
301: ASHSPSSSFQ RSVSNEPPPY FLCPITQEVM REPSVAADGH TYEAEALREW LHNGHDTSPM TNLKLAHHHI TSHSKFLSHL HYTFQIVSKH SSTATIQRVK
401: SITIGSNCIP QTEEGGASRT AIGALVSTGK TRTKLSSEED AAIIPEGCAA TAATPKECPV LVRTRSSSSA RHSFTVSSRD PVRSNDGRSS VAGTQVAAQN
501: IFLHVQSYKL YEATSSRKNR SLGMELASAT VASVFLGFGS LFLLLASGVY V

Best Arabidopsis Sequence Match ( AT1G01670.1 )
(BLAST)

001: MTPSSSGLEQ SEIDAIQELE QTSRNDTLLK YHDICIDEGV IEQDVDMSCF SANSVGEWIV ELIYQNNIKK LIMGATADSH YSEGMVHITP TKADYVIQHA
101: PHCCNIWLVC NGNLIQTREG RFEHAGSAYS SSSSLHSIDS ALIPYGGAGR AERVTEPHAL SSSEEQSARG IEKMYYEEQR RRLEIEELKR EKEQRDKMRR
201: VREEALSSSS GVTKILYNEE VMRRREVEAE LNRAKAEIED MKRVQIELKE QHYADCRLLE KERDEAIKTT EELLRALEKG ESSIPLQWSV SIEPPQCFIC
301: PISKDIMQNP HVAADGYTYE ADEFRRWLNH GGEKSPMTNL RLENRNLIPN LVLRSAIKDW LQQHP

Arabidopsis Description

PUB56U-box domain-containing protein 56 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXQ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.